Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00818 ATGGCTGAAGGCAAGCTCGATCTGCCTGACGATCTCCTGTCCTCTAGGCCCTCCGATCAATCTTGGACATCGAAAGTTTCAGTGGATGCATCTGGAGGAAATGGGGACAAGTTGCTTTTGGGTTATATTGATGAGCCAAAAGATCATTCAGCATCCGAAAGCAGTATACCTTTATCACCCCAGTGGCTCTATGCCAAGCCGAGTGAAACTAAGATGGATATGCGTGCTCCTACTCCAGTTTCCCTGGCAAACTCTATTGATCCCAATCAAAAGGAGGGTTGGCGTCCAGATGGATCTGAAGACAAAAAAGATTGGAGGAGAGTAACTGCTGACAATGAAATTAGTCGACGTTGGAGAGAAGAGGAAAGAGAAACTGGATTACTTGGTGGGAGAAGAGATCGTAGGAAATCTGATCGTCGTGCAGATAACGTCTCAATTCGAGATACAACTGAAAGTAGATCCATTCCCACTTCAGACCGCTGGCATGATGGTCGTAATGCAGGGCATGAAACTCGGCGTGACAACAAATGGTCATCAAGATGGGGTCCTGAGGACAAAGATAAGGAATCTCGGACTGAAAAGCGATTAGATGCAGACAAGGATGATAATCATAATGACGGACAATTGGTGGGTAGCATGCGATCAACTTCTGAACGTGAATCCGAGTCTCGTGATAAATGGAGGCCTCGTCACAGGATGGAAATTCATTCAAGCAGCTCTGCAAGTCACCGAGCTGCACCTGGATTTGGCCTCGAGAGAGGACGAGGGGAGGGTTTGAATGTAGGGTTTACTATTGGACGAGGAAGGGCAAATATCATAGGGAGATCATCTGCTGGCCTGATCGGTGCCCCTCACTTGGAGAATAGTGAACACACCCTTCGGAAATTGAAATATTCAGTTCTCACATTTTGCTATCCTAGGGGTAAGATTCTTGATATTTATCGAAGCCAAAAACTTAATCCATCTTTTGCTGCCATGCCAGACGAGATGGAAGATTCAGATGCCATAACTCAGTCAGGTGTTCTGGAACCTCTGGCATTTATTGCGCCAAGTGACATGGAAGAGGCTGCTCTAAGTGATATTTGGAAAGGAAAGGTAAACAGTAGTGGGGTGGTCTATGACTCATATCGAAAGGAGAAATCCCGTGATCGGGTTATAGACTCTATCGAGGGAAATTCAGGAATTCTACCTTCATATTTAACAACTGAAAGTAGTACTGGGGATTCAGCAATTATTGAGGAAGAAAAAAAAGTTCTACCTTCAACTCTCTGCGAAGAGACTGCTGGCTCCCTTCAAGAAGTTGCAAATGGTTATGCATATAATGCCATTGACAAGAATACAATGTGGAATTATGGTTTATTTAGAAATTTAATGAGTGAAGAAAGAAATACTCGAAATGGGGATCAACGTAAAGCACCAGTTGCTTGGTCAGATTCTGATGGTTTGGTTACTATGAGTTCTAAAGGTAGTGTTGTTCAAAATGTATTGGAGATTGGTGGTGCTAGTCAAAGTGCTTCACAAACCAGTGGTCGTGATAGTGGGCAAATAGAGAATTCTGGTTTCAAGTATAATCGAGTCAATAACAATGAGGTGGAAAATTCTTTGGGTGTCAATCCTAATCTTCCTGATGGTTCAAGTTCTCTCTTTCTAATGCCCTCCTTTGACCAAAATCAATTCAGTAGCTCCAATGCTGAAAATGTATTAAAGGCAACCCCACCTGAGGAGTTGAGTTTGTACTATCTTGATCCTCATGGGATTATACAAGGGCCCTTCATAGGGGCAGATATTATCTTGTGGTATGAGCAGGGATTTTTTGGGACTGACCTTCCTGTCCGACTCTATGACTCTCCTGAAGAGACACCTTTCAAGAGTTTAGGTGAAGTAATGCCACATTTAAAAGATAGTACTGGATATTCTAATGTTGCTGTATCAAATTCTACACTTGAGCAAACTGATGCCCCATTAAGGAATATGGAAGATAGTTTTGCTTCTCTCCCCATTGCAGAAACTTCTGACTTATGTGCTGACCTGAGCCTGCCATTGGCTGAGATCAATAAGTTCCCTCAACTCATTCCACCGAGAATGTCCGAGCCTGAAGATCCACTGCAAGTACCACATTCCAAGGGACAAAGCTTTCATGATTTTATAGTGCAGGACGAAGGAAGACCAGGAAACACTGACTATCCAGTTCCAAGGTCTTCTGGGGGGATTCCTCTGGGAAATTTATCAAGTCAACCTTTCTCCAATCCAATTGCAGAGCCTGGTTTGGCAGGTCAGAATAATAGCAGGATGCACCCTTTTGGTTTGATGTGGTCTGAGCTTGAAAGCACAAGTTCAAAGCATGTGAAACCATCTAATATACCAACGAGCGCAGGAAGGGTTGCTCCATTAGGTGCCATGGCTGATCCATCACCTTCCACGGAGGCGTGGTTTGATGGTTATAGAAAAAATTCATATTCTGACAACTTGTTTCAAGACACGTTGTCCCGACATTTGGGACGCGTGGAAAAAGAATCTAACTCTTTTGATTTACCAGACCAGCTTATTTCACACCAATATCACCAACAGCTAAATTTGTCATCTCCTCACGGAAATGAATCAGCTATTGATCATGCACGGCAGAATCGTATTCAGCAACAGTTGTCTGAACATTCTGCCATGGATCTGGATCGTCTTTTAGCTATCCAACTACGACAGCAGCAACAGCTTCAACTGCAACAACATCATTTGCGACAACAACAGTTTCAGCAACAACAGAAGTTCTTGCAGGAGCAACAGCAAAAATTCTTGCAAGAGCAACAGCAGTCTCAAGTTCGACAAGTGCTGCTTGAACAGTTGCATGGCCAAATGCGCGATCCTGGCCCTGTGCAGTCACATTTTAATCAACTTGGAGCCAACAATGTTCTAGATCAGGTGATCTTAGAGCAGCAGCGTGTACATGACCTACAACAATTGTCACAACGGAATTTAAGACATTCAAACCCATCTTTTGAGCATTCTATTCACTCTAAATTTGGTCAGATGCGACAACAAGATCATCATAGAGATTTGTTGGAGCTAATATCTCGAGCACAACAAGGAAAAATGCAGTCAATGGAGCAACAAATGCTACAGCAAGAACAGATGCTTCAGCAAGAACAGATGCTTCAGCAAGAACAGAGACTTCAACAAGAACAGATGCTTCAGCAAGAACAGATGCAAGCCAGGTATTTGTCAATGGGGTTGAGACGAACCACTTTGGAAGACGAGAGACATGTTGCTTCTATTTGGCCAGGTGAGGAGCCAGGTCAGCAGTTTTTCAGGTCTCATCCTACCCCTCAAAGAGTTAATTCTGCAACCTTTGATTTATATCAGCAACAGAGGCCATCTCATGATGAACAGCTGAATCACCTTGATCGCAATCTTTCATATCAAGATCTAATTCTTCAGTCTGGATCGTTTCCATTTGAGAGGTCTATGACTTTGCCTTCTGGTCCTCCTGAAATTAATTTGGATGCGGTCAATAGTTTGGTTCTTCCACATGGTTTAGACATACTTGATTCCAGTGTACGAATCCCATCTGGTGGTCAATTTGGAGCATCTGGAGCTGGTATCAATGTGCATAATTATGAACATAGCGGTGTACCTAATCACTTTCAAGTTTCACATTTGGATGGAATTGAGAGCCATTGGTCAGAAAACAATGAGCAAGTCCATCTTAGTTCTGAGCTGTTAAAGAGGGAGTCAAAATCTAATATGACTTCTGGAGATCCAGTTTTATGGATGTCAGATGGGTTAAATGATGAAAAGTCAAAGCGACTATTGATGGATTTGCTGAATAAGAAATCAGTCCAACCTTCAGAGCCCTTTAATGTGGGTAATGGAGTATCTTACAATAGGGTTTCCGCTGGCTTCTTTTCTGGATCAGGCCCTGCAGATCATCCATTCAATCTTAATTTAGACAAAGAAGCTGGTCTAAACTCTTTTCATGTGGACTCATATGGTTCTAATACATGTGAACCATTGCAAGCTCATCAGCACAGCAGTTTGGGAGGCAAAGAAAAAGTCCCATATAGATCAATTCCTGGAGCTTGCATGGATGAGGATTCTATGGGTGTTAAAACGGGTGACATAATGTATGCACATTCTAACCCAGTTAGTAAGCTGTCGGTAAACAAAGAGCTTTCAGGTGCAGGAAGTAGGAGTCGTGATAGTTTGAAAAATCGAACTTTTGATGTTCAAGAACGAATGCTTGAACATGGAATGTTGGCTGCAGCAGATCGTGGGGGAACTGTAAATAATGTCCTTAGCAGGCATTCTTCTCTTGGATCTACTGGCTTTAACAACTACATGGGCATGGTTAACTCATTACCTGAAGATATTCCTAAAGACCAGGTAAATATGCTTTCCAAAGATACTATTTTGTTGAGGCGGCCTCCCGTCTCTCGTGCCATGTCATCGCATGAAGGATTATCGGAGCTAGTTTCTGATTCTATCAGAGGGCAAAGTACGTCCAATGGCCCTGCGGATGGAGCAAGATCAAGCCAGAGTACAGATGTGTCGGTAATGTCTGGAAAGAAGGAGATGAGATTTCGACGGACATCATCAGGAAGCGAAGCAGACGCGTCGGAGGCATCGTTTATGGACATGCTGAAGAAGACTGCAGCCCCTGAAGCACACTTGGCTGCAGCCATTCCCGAGCCAACAGATGGATCACAAGGGGGGAAAGCGGGGAAGAAGAAAGGAAAGAAGGGGCGGCAAATCGACCCGGCTTTGCTTGGCTTCAAAGTCACGAGCAACCGAATAATGATGGGTGAAATACAGCGTATAGAGGATTGA 4818 43.52 MAEGKLDLPDDLLSSRPSDQSWTSKVSVDASGGNGDKLLLGYIDEPKDHSASESSIPLSPQWLYAKPSETKMDMRAPTPVSLANSIDPNQKEGWRPDGSEDKKDWRRVTADNEISRRWREEERETGLLGGRRDRRKSDRRADNVSIRDTTESRSIPTSDRWHDGRNAGHETRRDNKWSSRWGPEDKDKESRTEKRLDADKDDNHNDGQLVGSMRSTSERESESRDKWRPRHRMEIHSSSSASHRAAPGFGLERGRGEGLNVGFTIGRGRANIIGRSSAGLIGAPHLENSEHTLRKLKYSVLTFCYPRGKILDIYRSQKLNPSFAAMPDEMEDSDAITQSGVLEPLAFIAPSDMEEAALSDIWKGKVNSSGVVYDSYRKEKSRDRVIDSIEGNSGILPSYLTTESSTGDSAIIEEEKKVLPSTLCEETAGSLQEVANGYAYNAIDKNTMWNYGLFRNLMSEERNTRNGDQRKAPVAWSDSDGLVTMSSKGSVVQNVLEIGGASQSASQTSGRDSGQIENSGFKYNRVNNNEVENSLGVNPNLPDGSSSLFLMPSFDQNQFSSSNAENVLKATPPEELSLYYLDPHGIIQGPFIGADIILWYEQGFFGTDLPVRLYDSPEETPFKSLGEVMPHLKDSTGYSNVAVSNSTLEQTDAPLRNMEDSFASLPIAETSDLCADLSLPLAEINKFPQLIPPRMSEPEDPLQVPHSKGQSFHDFIVQDEGRPGNTDYPVPRSSGGIPLGNLSSQPFSNPIAEPGLAGQNNSRMHPFGLMWSELESTSSKHVKPSNIPTSAGRVAPLGAMADPSPSTEAWFDGYRKNSYSDNLFQDTLSRHLGRVEKESNSFDLPDQLISHQYHQQLNLSSPHGNESAIDHARQNRIQQQLSEHSAMDLDRLLAIQLRQQQQLQLQQHHLRQQQFQQQQKFLQEQQQKFLQEQQQSQVRQVLLEQLHGQMRDPGPVQSHFNQLGANNVLDQVILEQQRVHDLQQLSQRNLRHSNPSFEHSIHSKFGQMRQQDHHRDLLELISRAQQGKMQSMEQQMLQQEQMLQQEQMLQQEQRLQQEQMLQQEQMQARYLSMGLRRTTLEDERHVASIWPGEEPGQQFFRSHPTPQRVNSATFDLYQQQRPSHDEQLNHLDRNLSYQDLILQSGSFPFERSMTLPSGPPEINLDAVNSLVLPHGLDILDSSVRIPSGGQFGASGAGINVHNYEHSGVPNHFQVSHLDGIESHWSENNEQVHLSSELLKRESKSNMTSGDPVLWMSDGLNDEKSKRLLMDLLNKKSVQPSEPFNVGNGVSYNRVSAGFFSGSGPADHPFNLNLDKEAGLNSFHVDSYGSNTCEPLQAHQHSSLGGKEKVPYRSIPGACMDEDSMGVKTGDIMYAHSNPVSKLSVNKELSGAGSRSRDSLKNRTFDVQERMLEHGMLAAADRGGTVNNVLSRHSSLGSTGFNNYMGMVNSLPEDIPKDQVNMLSKDTILLRRPPVSRAMSSHEGLSELVSDSIRGQSTSNGPADGARSSQSTDVSVMSGKKEMRFRRTSSGSEADASEASFMDMLKKTAAPEAHLAAAIPEPTDGSQGGKAGKKKGKKGRQIDPALLGFKVTSNRIMMGEIQRIED 1605
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 14481327 14489607 - Bpe025248 Bpe13g00818 113598

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00818 1605 MobiDBLite consensus disorder prediction 217 238 - -
Bpe13g00818 1605 PANTHER GYF DOMAIN-CONTAINING PROTEIN 1054 1605 - -
Bpe13g00818 1605 PANTHER GYF DOMAIN-CONTAINING PROTEIN 1 1052 - -
Bpe13g00818 1605 CDD GYF 575 633 IPR003169 GO:0005515
Bpe13g00818 1605 MobiDBLite consensus disorder prediction 1474 1537 - -
Bpe13g00818 1605 MobiDBLite consensus disorder prediction 14 30 - -
Bpe13g00818 1605 Gene3D - 561 653 IPR035445 -
Bpe13g00818 1605 MobiDBLite consensus disorder prediction 93 207 - -
Bpe13g00818 1605 SUPERFAMILY GYF domain 568 634 IPR035445 -
Bpe13g00818 1605 Coils Coil 1029 1049 - -
Bpe13g00818 1605 MobiDBLite consensus disorder prediction 1482 1516 - -
Bpe13g00818 1605 MobiDBLite consensus disorder prediction 1 251 - -
Bpe13g00818 1605 ProSiteProfiles GYF domain profile. 575 626 IPR003169 GO:0005515
Bpe13g00818 1605 PANTHER GYF DOMAIN-CONTAINING PROTEIN 1054 1605 - -
Bpe13g00818 1605 PANTHER GYF DOMAIN-CONTAINING PROTEIN 1 1052 - -
Bpe13g00818 1605 SMART gyf_5 576 631 IPR003169 GO:0005515
Bpe13g00818 1605 MobiDBLite consensus disorder prediction 1556 1581 - -
Bpe13g00818 1605 Pfam GYF domain 579 625 IPR003169 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00818 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein - qsu:112017475 1332.01
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe13g00818 Bpe14g00803 CCT
Bpe13g00818 Bpe14g00803 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00397 Bpe-Chr2:2574903 Bpe13g00818 Bpe-Chr13:14481327 1.72E-19 dispersed
Bpe04g00211 Bpe-Chr4:1443441 Bpe13g00818 Bpe-Chr13:14481327 1.51E-14 dispersed
Bpe13g00818 Bpe-Chr13:14481327 Bpe14g00803 Bpe-Chr14:6051424 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1304 . . . . Bpe13g00818 . . . . . . . . . . . . . . . . . . . Cla06g00177 Cam06g0034 Cec06g0196 Cco06g0191 Clacu06g0193 Cmu06g0187 Cre06g0959 . . . . . . . . Blo02g00198 . . . Bpe14g00803 . . . . . . . . . . . . Bhi12g02418 . . . Hepe03g1143 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003820 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 2 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00818 Bpe_Chr13 FPKM 12.701791 11.816128 8.79282 8.679172 7.028963 7.782952 8.597765 0.144678 0.0 0.21496