Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00825 ATGGCGGGCAAACCCGAAGGAACAGTTGATCAGGACCCTGCTTCTTCTTCTTCTTTGCCCAAGGTCTCCGCCGGATTACCTGCACCGTCTGATGACGAGACCAAGAAATGGGGGACACATATCATGGGGGCTCCGGCCTACCCGACCGCGCATCCTGACAACCAAATGGCGGCGGCGTGGAGCAACCCCGATCGCCAGCAGAGCTATCACTACCCTTATGTGCAGTACTCGCCAGTGGATCGCCCGACTAGCAATCCGTTAGAGCCCGTAATTCATTTATTCAATTCCTGGAGCTCCAGAACCGAATCTATCTCCCGTAACATCTGGCATAATCTGAAAACGGGGAAGTCGGTATCGGAAGCAGCGTGGGGGAAGGTGAATCTAACTGCGAAAGCTATAACGGAGGGGGGGTTCGAGTCTCTTTTCCGGCAAACATTCGGCCCCGATCCGAACGAGAAGCTGAAGAAGACGTTCGCTTGTTACCTTTCAACGGCCACCGGGCCCGTCGCCGGAACCCTCTATTTGTCAACATTCCGGCTGGCATTTTGCAGTGATCGTCCATTGTACTTCACTGCTCCTTCTAGACAAACTTATTGGAGCTATTACAAGGTGGTGATACCACTGGGAGACATGGCAACTGTAAATCCGGTGGTGATGAAGGAAAACCCGCCGGAGAAATACATTCAGATCTCGACCGTCGACGGCCACGATTTCTGGTTCATGGGTTTTGTGAATTTCGAAAAGGCAACTCACCATCTCTTGAGCTCTGTTTCGGATTTCAGAGGAAATGTAGTTTCCTAA 801 51.94 MAGKPEGTVDQDPASSSSLPKVSAGLPAPSDDETKKWGTHIMGAPAYPTAHPDNQMAAAWSNPDRQQSYHYPYVQYSPVDRPTSNPLEPVIHLFNSWSSRTESISRNIWHNLKTGKSVSEAAWGKVNLTAKAITEGGFESLFRQTFGPDPNEKLKKTFACYLSTATGPVAGTLYLSTFRLAFCSDRPLYFTAPSRQTYWSYYKVVIPLGDMATVNPVVMKENPPEKYIQISTVDGHDFWFMGFVNFEKATHHLLSSVSDFRGNVVS 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 14520272 14521424 - Bpe010516.1 Bpe13g00825 113605

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00825 266 PANTHER GEM-LIKE PROTEIN 5 24 263 - -
Bpe13g00825 266 PANTHER GEM-LIKE PROTEIN 2 24 263 IPR037848 -
Bpe13g00825 266 Pfam GRAM domain 141 250 IPR004182 -
Bpe13g00825 266 MobiDBLite consensus disorder prediction 1 37 - -
Bpe13g00825 266 SMART gram2001c 140 218 IPR004182 -
Bpe13g00825 266 CDD PH-GRAM_GEM 151 259 - -
Bpe13g00825 266 Gene3D - 138 258 IPR011993 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00825 - - - qsu:112025225 403.29
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe13g00825 Bpe14g00808 CCT
Bpe13g00825 Bpe14g00808 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe10g00288 Bpe-Chr10:10254120 Bpe13g00825 Bpe-Chr13:14520272 1.65E-36 transposed
Bpe12g00014 Bpe-Chr12:148433 Bpe13g00825 Bpe-Chr13:14520272 2.35E-13 transposed
Bpe06g00092 Bpe-Chr6:1322329 Bpe13g00825 Bpe-Chr13:14520272 1.03E-52 transposed
Bpe13g00825 Bpe-Chr13:14520272 Bpe14g00808 Bpe-Chr14:6081037 1.93E-155 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1330 . . . Bda11g00376 Bpe13g00825 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00260 . . Blo02g00203 . . Bda11g00376 Bpe14g00808 . . Bma06g01332 . . . . . . . . Cpe03g01197 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005307 2 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 1 1 3 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00825 Bpe_Chr13 FPKM 0.0 0.217319 452.909637 446.549957 0.730519 0.618222 0.452783 2.332182 3.148041 3.134803