Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00827 ATGCATTTTGCTAAGCTCGATGATTCTCCTATGTTCCGCAAGCAGATACAAAGCTTGGAGGAGAGTGCTGAATCCTTACGGGAAAGAAGCTTAAAGTTTTACAAAGGATGTCGAAAATACACTGAAGGGCTTGGAGAGTTTTATGATGGAGACATTGCCTTTGCCAGTGCCCTAGAAGCCTTTGGTGGAGGGCATAATGATCCCATAAGTGTGGCTTTTGGAGGCCCTGTTATGACCAAATTTACAATTGCACTAAGGGAAATCGGGACATACAAGGAAGTCCTTCGGTCCCAGGTGGAGCATATGTTAAATGACAGATTGCTACACTTCGTAAATATTGATTTGCTCGAGGTGAAGGAAGCAAGGAAGCGATTTGATAAAGCTAGCCTTCTTTATGACCAGGCTCGCGAGAAGTTTTTATCTCTTAGGAAGGGTACAAAAAACGACATAGCTGCTCTTCTGGAAGAGGAACTTCACAGTGCAAGATCTGCCTTCGAGCAAGCGCGATTTAATTTGGTAACCGCACTTTCTAATGTTGAAGCCAAAAAAAGGTTTGAATTTTTGGAAGCAGTGAGTGGGACGATGGATGCACATCTCAGATACTTCAAACAGGGGTATGAACTGTTACATCAAATGGAGCCGTACATTAACCAGGTGTTAACTTATGCTCAACAGTCACGTGAAAGATCCAACTATGAGCAAGCAGCTCTCAATGAAAGGATGCAAGAGTACAAAAGGCAGGTTGATCGAGAAAGTAGGTGGTCTTCCAATGGCTCTAATGGATCTCCAAATGGAGATGGTATACAAGCCATCGGTAGAAGTTCACATAAAATGATAGAGGCGGTAATGCAATCTGCCACAAAGGGAAAGGTTCAAACCATTCGACAAGGCTATCTCTCAAAACGGTCATCAAACTTGAGAGGTGACTGGAAAAGAAGATTTTTTGTTCTTGATAGCCGTGGAATGTTGTACTATTATCGAAAGCAGTGCATTAAATCATCTGGCTCCTCTGGTCAGCTATCCAATCAGAGGAATAGTTCTGAGATTGGCTCAGGACTGCTCAGCCGCTGGCTTTCTTCCCATTATCATGGTGGAGTACACGATGAGAAATCCGTTGCACATCACACTGTGAACCTGCTGACATCAACAATCAAAGTTGATGCCGACCAATCAGACCTTAGGTTTTGTTTCAGGATCATTTCACCAACAAAAAATTACACTCTGCAGGCAGAGAGTGCGATGGATCAAATGGATTGGATTGAGAAGATAACAGGAGTTATTGCTTCTTTACTTAGTTCTCAGGCTCCTGAGAGGTGTTTGTCAGCTAGTCCAATGGGAAGTGGTCATGATAGGTCTGCCAGTGAGAGTAGTTCTTTTGAAAGTTCTGACTTTGATCAGACTGCAGTTGAAGAATTTACAACTGAGAGGAGCCTATCTTCTTCTCACCTAGACCGCCCATCCAGGAATTTGCTACAGCAACGGTCCTGTGTAAAAATTGAGAAGCCAATTGATATACTGAGAAAAGTTTGTGGCAATGATAAATGTGCTGATTGTGGTGCCGTGGAACCAGATTGGGCATCTTTGAACCTAGGAGTTCTTGTTTGCATCGAATGCTCCGGTGTTCATCGAAATCTTGGTGTACACATATCTAAGGTAAGGTCCCTAACCTTGGATGTCAAAGTGTGGGAGCCTTCTGTCATCAGTTTGTTTCAGTCTCTAGGCAATGCATTTGCCAACTCTGTGTGGGAGGAGTTATTGCAATCGAGAAGTGCTTTTCAGGTTGATCTTGTCTCCACAGGGTTTTACAAGTCTGATAAACAGCAGTTGCTTTTCATCAACAAACCTAATCATTCTGATTCTATATCAATAAAGGAGAAGTTCATCCATGGAAAGTATGCAGAAAAGCTTTTTGTTCGTATGCCAAAAGACAATCAATATCCGCATGTAATTGCACTACAAATGTGGGAGGGTGTACGCACTAACGACAAGAAAGCTGTTTATCGTCACATTGTCAACTCCGAGACAGATTTAAATACTGTTTATGACCATGCTTCATGGGGGTCTCAATCTCTAGCCAAAGTGATGCTATTGCAAGAGCAAAGTGGCCTACAGCACAGCTCTTGTTATACGCCTGCCGAAGCAATTGAAAGGTCTTCAACTAGCTCTTTGAATTTAGGGAGTACTAGTGAAAGCCAGAGTATAGACGATCTAGATGGGTGCACCCTCTTGCACCTTGCCTGTGAAACCTCTGACATTGGGATGCTTGAACTTCTACTGCAGTATGGTGCAAATATAAATGCTACTGATTCAAGAGGTCAAACCCCACTTCACTGGTGTATCTTTAAGGGCAAGACTACATTCGTAAAGTTTCTTCTGACAAGGGGAGCTGACCCACGAGCTGCTGATGGTGAGGGTAGAACCCTTTTTCAGCTTGCAATGGAGTCGAACTGTAATGACAGGGAGATACTTGCTCTTTTAGCAGACTCAAACGGG 2493 43.2 MHFAKLDDSPMFRKQIQSLEESAESLRERSLKFYKGCRKYTEGLGEFYDGDIAFASALEAFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLLHFVNIDLLEVKEARKRFDKASLLYDQAREKFLSLRKGTKNDIAALLEEELHSARSAFEQARFNLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQEYKRQVDRESRWSSNGSNGSPNGDGIQAIGRSSHKMIEAVMQSATKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCIKSSGSSGQLSNQRNSSEIGSGLLSRWLSSHYHGGVHDEKSVAHHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESAMDQMDWIEKITGVIASLLSSQAPERCLSASPMGSGHDRSASESSSFESSDFDQTAVEEFTTERSLSSSHLDRPSRNLLQQRSCVKIEKPIDILRKVCGNDKCADCGAVEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVISLFQSLGNAFANSVWEELLQSRSAFQVDLVSTGFYKSDKQQLLFINKPNHSDSISIKEKFIHGKYAEKLFVRMPKDNQYPHVIALQMWEGVRTNDKKAVYRHIVNSETDLNTVYDHASWGSQSLAKVMLLQEQSGLQHSSCYTPAEAIERSSTSSLNLGSTSESQSIDDLDGCTLLHLACETSDIGMLELLLQYGANINATDSRGQTPLHWCIFKGKTTFVKFLLTRGADPRAADGEGRTLFQLAMESNCNDREILALLADSNG 831
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 14547461 14558117 - Bpe025249 Bpe13g00827 113607

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00827 831 CDD ArfGap 503 632 - -
Bpe13g00827 831 Pfam Ankyrin repeats (many copies) 741 792 IPR002110 GO:0005515
Bpe13g00827 831 SUPERFAMILY ArfGap/RecO-like zinc finger 500 638 IPR037278 -
Bpe13g00827 831 SUPERFAMILY Ankyrin repeat 734 826 IPR036770 -
Bpe13g00827 831 ProSiteProfiles Ankyrin repeat profile. 738 770 IPR002110 GO:0005515
Bpe13g00827 831 SMART 5bar 11 218 IPR004148 GO:0005515|GO:0005737
Bpe13g00827 831 SMART ANK_2a 771 800 IPR002110 GO:0005515
Bpe13g00827 831 SMART ANK_2a 738 767 IPR002110 GO:0005515
Bpe13g00827 831 CDD PH_ACAP 295 432 - -
Bpe13g00827 831 SMART PH_update 293 430 IPR001849 -
Bpe13g00827 831 ProSiteProfiles Ankyrin repeat profile. 771 803 IPR002110 GO:0005515
Bpe13g00827 831 ProSiteProfiles Ankyrin repeat region circular profile. 771 802 - -
Bpe13g00827 831 PRINTS HIV Rev interacting protein signature 512 531 IPR001164 GO:0005096
Bpe13g00827 831 PRINTS HIV Rev interacting protein signature 554 575 IPR001164 GO:0005096
Bpe13g00827 831 PRINTS HIV Rev interacting protein signature 531 548 IPR001164 GO:0005096
Bpe13g00827 831 MobiDBLite consensus disorder prediction 447 463 - -
Bpe13g00827 831 Gene3D - 648 829 IPR036770 -
Bpe13g00827 831 SUPERFAMILY BAR/IMD domain-like 6 315 IPR027267 -
Bpe13g00827 831 Pfam PH domain 294 427 IPR001849 -
Bpe13g00827 831 Gene3D Arfaptin homology (AH) domain/BAR domain 4 251 IPR027267 -
Bpe13g00827 831 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD1 1 829 - -
Bpe13g00827 831 MobiDBLite consensus disorder prediction 441 463 - -
Bpe13g00827 831 MobiDBLite consensus disorder prediction 253 269 - -
Bpe13g00827 831 Gene3D - 285 440 IPR011993 -
Bpe13g00827 831 ProSiteProfiles ARF GTPase-activating proteins domain profile. 500 647 IPR001164 GO:0005096
Bpe13g00827 831 SMART arf_gap_3 500 645 IPR001164 GO:0005096
Bpe13g00827 831 Coils Coil 118 138 - -
Bpe13g00827 831 Gene3D Arf GTPase activating protein 482 647 IPR038508 -
Bpe13g00827 831 Coils Coil 227 247 - -
Bpe13g00827 831 Pfam BAR domain of APPL family 6 232 - -
Bpe13g00827 831 SUPERFAMILY PH domain-like 236 427 - -
Bpe13g00827 831 ProSiteProfiles PH domain profile. 292 428 IPR001849 -
Bpe13g00827 831 CDD BAR_SFC_plant 14 215 IPR035670 -
Bpe13g00827 831 MobiDBLite consensus disorder prediction 247 270 - -
Bpe13g00827 831 ProSiteProfiles Ankyrin repeat region circular profile. 738 769 - -
Bpe13g00827 831 PANTHER CENTAURIN/ARF 1 829 IPR045258 GO:0005096
Bpe13g00827 831 Pfam Putative GTPase activating protein for Arf 503 639 IPR001164 GO:0005096
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00827 K12489 ACAP; Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein - qsu:111988141 1395.95
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe13g00827 Bpe14g00814 CCT
Bpe13g00827 Bpe14g00814 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe13g00827 Bpe-Chr13:14547461 Bpe01g00481 Bpe-Chr1:2985026 2.59E-17 dispersed
Bpe10g00170 Bpe-Chr10:4169841 Bpe13g00827 Bpe-Chr13:14547461 4.62E-12 transposed
Bpe10g01015 Bpe-Chr10:15589266 Bpe13g00827 Bpe-Chr13:14547461 0 transposed
Bpe13g00827 Bpe-Chr13:14547461 Bpe14g00814 Bpe-Chr14:6138522 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1342 . . . Bda11g00373 Bpe13g00827 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00226 . . Blo02g00208 . . Bda11g00373 Bpe14g00814 . . Bma06g01328 . . . . . . . . Cpe03g01178 . . . . . . . . . . . . . . . . Chy07g01544 Cme07g01989
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004542 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 2 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00827 Bpe_Chr13 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0