Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00830 TTAGTTCCTATGGCTGCAACCGAGGAATTGCTCCGCAGTTCTTTGGCTGAAAAGCAATCTGCCGTCGATGCTCAAGGCAGCGCTGTTAAAGCGCTGAAAGCCGCTGGTGCAATCAAGTCTGAAATCGATGCTGCCATTGAAGCCCTGAATAGGTTGAAGCTCGAGAAAACATCCGTTGAGAGTCAGTTGCAAGCGATCATCGCTGGTGCGGGGGGTGATGGGTCTGTTAGCAGAGAAGCATTTCGTCAAGCGGTGGTTAATACTCTCGAGCGGCGTTTGTTTTATATTCCAGCGTTCAAGATTTATCGTGGGGTTGCTGGTTTATACGATTACGGACCGCCAGGCTGCGCTGTTAAGTCCAATGTCCTCGCTTTCTGGCGTCAGCATTTTGTCCTCGAGGAAAACATGTTGGAAGTTGACTGCCCCTGTGTCACACCGGAGATTGTTCTGAAGGCTTCTGGTCATGTCGATAAATTCACAGATCTCATGGTTAAAGATGAGAAAACCGGGACCTGTTTCAGTGCTGATCACTTAATCAAAGACTTTTGTAATGAGAAACTTCAGAAAGACCTCACCATCACTTCCGAGAAAGCAGCAGAGCTAAAACATGTACTTGCTGTTTTGGATGACCTCTCTGCTGAAGATTTGGGTGCAAAGATTAAGGAATATGGCATTACTGCCCCAGACACACAGAATCCATTGTCTGATCCTTATCCATTTAACTTAATGTTTCAAACATCAATTGGCCCATCTGGTCTGAGCCCTGGATACATGCGACCAGAAACTGCGCAGGGCATATTTGTTAACTTTAAAGATTTGTACTATTACAATGGGAACAAGCTTCCCTTTGCAGCGGCTCAAATTGGTCAAGCTTTTAGGAATGAGATATCCCCTCGTCAAGGTCTTCTCAGAGTCCGTGAGTTCACATTAGCAGAGATTGAGCACTTTGTTGATCCTGAAGACAAATCTCACCCAAAATTCTCCGATGTTGCAAATTTGGAGTTTTTGATGTTTCCAAGAGAAGAACAAATGTCTGGTAACTCGGCAAAGAAAATCCCACTGGGTGAAGCAGTTGGAAGGGGAATTGTGAATAATGAAACTCTTGGCTTTTTCATTGGGAGAGTATATTTATTCCTAACTCAACTTGGTATAGACAAAGATCGCTTACGCTTCCGGCAGCACCTTGCAAATGAAATGGCTCATTATGCAGCTGACTGTTGGGATGCTGAAATTGAATGTTCTTATGGCTGGATCGAGTGTGTTGGTATTGCAGATAGATCTGCCTATGACTTGCGTGCTCATTCGGAGAAAAGTGGTGTTCTTTTAGTGGCGCAAGAAAAATTTTCAGAACCTAGAGAAGTGGAGAAATTGATCATAGCTCCGGTCAAAAAAGAACTAGGCCTTGCGTTTAAGGGTAACCAAAAGAATGTTGTTGAGGCTTTGGAGGCTATGAACGAAGAAGAAGCCTTTAAAATGAAGGCAACTCTAGAATCAGATGGGGAGGTGGAGTTTTACGTCTGTACACTTGAGAAAATAGTATCGATAAAAAAGAACATGGTTTCGATTTCAAAGGAGAAAAAAAAGGAACATCAAAGAGTTTTCACTCCCTCTGTAATTGAACCATCATTTGGTATTGGAAGGATAATTTATTGCCTCTTCGAACATACTTACTACATGAGGCCTAGTAAAGCTGGCGAAGAACAGCTGAACGTATTTCGGTTTCCACCTCTCGTTGCACCAATTAAGTGCACAGTTTTCCCCCTCGTTCAGAATCAACAATATGAGGACGTTGCTAAAGTTATTTCCAAGTCGTTGACGCTTGCTGGTATCTCGCATAAGATTGACGTTACAGGCACCTCAATCGGTAAACGATACGCCAGAACTGATGAGCTTGGTGTACCCTTTGCCATCACGGTAGATTCTACGGAATCGGTTACAATCCGGGAGAGGGATAGCAAAGATCAAATCCGGGTTACCGTGGGAGAGGCAGCATCTTTCGTGAAAAACGTGATGGATGGATATACGACATGGGATGAAGTGTGGGCCTCGAATTCCCTCATGGGAAGAAGATTGAATTCAAATAGGTCAGGTCCCATTGGAGAAGAACCCAAATCATTTACTTCTTGA 2127 43.86 LVPMAATEELLRSSLAEKQSAVDAQGSAVKALKAAGAIKSEIDAAIEALNRLKLEKTSVESQLQAIIAGAGGDGSVSREAFRQAVVNTLERRLFYIPAFKIYRGVAGLYDYGPPGCAVKSNVLAFWRQHFVLEENMLEVDCPCVTPEIVLKASGHVDKFTDLMVKDEKTGTCFSADHLIKDFCNEKLQKDLTITSEKAAELKHVLAVLDDLSAEDLGAKIKEYGITAPDTQNPLSDPYPFNLMFQTSIGPSGLSPGYMRPETAQGIFVNFKDLYYYNGNKLPFAAAQIGQAFRNEISPRQGLLRVREFTLAEIEHFVDPEDKSHPKFSDVANLEFLMFPREEQMSGNSAKKIPLGEAVGRGIVNNETLGFFIGRVYLFLTQLGIDKDRLRFRQHLANEMAHYAADCWDAEIECSYGWIECVGIADRSAYDLRAHSEKSGVLLVAQEKFSEPREVEKLIIAPVKKELGLAFKGNQKNVVEALEAMNEEEAFKMKATLESDGEVEFYVCTLEKIVSIKKNMVSISKEKKKEHQRVFTPSVIEPSFGIGRIIYCLFEHTYYMRPSKAGEEQLNVFRFPPLVAPIKCTVFPLVQNQQYEDVAKVISKSLTLAGISHKIDVTGTSIGKRYARTDELGVPFAITVDSTESVTIRERDSKDQIRVTVGEAASFVKNVMDGYTTWDEVWASNSLMGRRLNSNRSGPIGEEPKSFTS 708
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 14578055 14582100 + Bpe010521.1 Bpe13g00830 113610

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00830 708 Gene3D - 459 527 - -
Bpe13g00830 708 Gene3D - 580 689 IPR036621 -
Bpe13g00830 708 ProSiteProfiles WHEP-TRS domain profile. 14 70 IPR000738 GO:0004812|GO:0005524|GO:0006418
Bpe13g00830 708 Gene3D Bira Bifunctional Protein; Domain 2 87 448 IPR045864 -
Bpe13g00830 708 TIGRFAM glyS_dimeric: glycine--tRNA ligase 83 669 IPR002315 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Bpe13g00830 708 SUPERFAMILY Class II aaRS ABD-related 570 683 - -
Bpe13g00830 708 Coils Coil 35 62 - -
Bpe13g00830 708 PANTHER GLYCINE--TRNA LIGASE 1, MITOCHONDRIAL 4 681 - -
Bpe13g00830 708 Pfam Anticodon binding domain 582 669 IPR004154 -
Bpe13g00830 708 SUPERFAMILY S15/NS1 RNA-binding domain 16 61 IPR009068 -
Bpe13g00830 708 CDD GlyRS_anticodon 552 668 - -
Bpe13g00830 708 SMART WHEP_TRS_a_2_a_3_a 18 75 IPR000738 GO:0004812|GO:0005524|GO:0006418
Bpe13g00830 708 Pfam tRNA synthetase class II core domain (G, H, P, S and T) 257 554 IPR002314 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Bpe13g00830 708 PRINTS Glycyl-tRNA synthetase signature 289 306 - -
Bpe13g00830 708 PRINTS Glycyl-tRNA synthetase signature 101 115 - -
Bpe13g00830 708 PRINTS Glycyl-tRNA synthetase signature 536 548 - -
Bpe13g00830 708 PRINTS Glycyl-tRNA synthetase signature 621 640 - -
Bpe13g00830 708 PRINTS Glycyl-tRNA synthetase signature 238 250 - -
Bpe13g00830 708 PRINTS Glycyl-tRNA synthetase signature 257 274 - -
Bpe13g00830 708 PRINTS Glycyl-tRNA synthetase signature 306 316 - -
Bpe13g00830 708 Gene3D - 158 242 - -
Bpe13g00830 708 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 220 561 IPR006195 -
Bpe13g00830 708 SUPERFAMILY Class II aaRS and biotin synthetases 82 585 IPR045864 -
Bpe13g00830 708 CDD GlyRS-like_core 85 431 IPR033731 -
Bpe13g00830 708 PANTHER GLYCYL-TRNA SYNTHETASE/DNA POLYMERASE SUBUNIT GAMMA-2 4 681 IPR027031 -
Bpe13g00830 708 Gene3D - 19 64 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00830 K01880 GARS, glyS1; glycyl-tRNA synthetase [EC:6.1.1.14] - csv:101213236 1206.43
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe13g00830 Bpe14g00817 CCT
Bpe13g00830 Bpe14g00817 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe13g00830 Bpe-Chr13:14578055 Bpe14g00817 Bpe-Chr14:6185508 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1354 . . . . Bpe13g00830 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe14g00817 . . Bma06g01327 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003505 1 2 2 1 2 2 2 2 2 1 2 2 2 1 1 2 2 2 2 2 1 1 1 1 1 2 0 2 1 2 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00830 Bpe_Chr13 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.012669 0.022528 0.014111