Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00831 ATGATTCATGACTGGTTACTTAATGGCCAGATTTATTTTCCAGGGTTTTCATCAGAAGCTCTCGCTCCAAGACAGGATTTGGGTATGCTTTCAGAGCTGCCTGCTACAGTGGCAGCTGTTAAGAACCCTACCTCTAAGATAGTTTATGACGAACACAATCACGAGCGTTTTCCACCTGGTGACCCCAGCAAGCGTGCTTTTGCGTATTTTGTTTTGACTGGAGGCAGGTTTGTGTATGCGTCTTTGATCCGGCTTCTGATCCTTAAGTTTGTTGTGAGCATGTCAGCTAGCAAAGATGTGCTTGCCCTCGCTTCCCTTGAGGTGGACCTATCCAGTATCGAGACAGGTTCGACTGTCACGGTCAAGTGGAGAGGAAAGCCAGTCTTCATTAGGCGAAGAACTGAAGATGACATTAAGTTGGCTAACAGTGTAGATGTTGGGACTCTTCGCGACCCACAGGAGGATTCAGAGAGAGTGAAGAATCCCGAATGGCTAGTTGTTGTTGGGGTGTGCACTCACTTGGGCTGCATCCCCTTGCCAAATGCTGGTGACTTCGGTGGTTGGTTTTGCCCATGCCATGGTTCGCACTATGACATTTCTGGCAGGATTCGGAAGGGCCCCGCACCATACAATCTTGAGGTGCCTACGTACAGCTTCTTGAGTGAAAATAAGTTGCTTGTTGGGTGA 687 48.47 MIHDWLLNGQIYFPGFSSEALAPRQDLGMLSELPATVAAVKNPTSKIVYDEHNHERFPPGDPSKRAFAYFVLTGGRFVYASLIRLLILKFVVSMSASKDVLALASLEVDLSSIETGSTVTVKWRGKPVFIRRRTEDDIKLANSVDVGTLRDPQEDSERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYSFLSENKLLVG 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 14584741 14585427 + Bpe010522.1 Bpe13g00831 113611

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00831 228 PRINTS Rieske 2Fe-2S subunit signature 166 177 IPR005805 GO:0016020|GO:0051537
Bpe13g00831 228 PRINTS Rieske 2Fe-2S subunit signature 188 200 IPR005805 GO:0016020|GO:0051537
Bpe13g00831 228 PRINTS Rieske 2Fe-2S subunit signature 200 212 IPR005805 GO:0016020|GO:0051537
Bpe13g00831 228 Pfam Rieske [2Fe-2S] domain 111 214 IPR017941 GO:0051537
Bpe13g00831 228 SUPERFAMILY ISP domain 89 227 IPR036922 GO:0051537
Bpe13g00831 228 CDD Rieske_cytochrome_bc1 105 228 - -
Bpe13g00831 228 PANTHER CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL 9 228 - -
Bpe13g00831 228 PANTHER CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL 9 228 IPR014349 GO:0051537
Bpe13g00831 228 SUPERFAMILY ISP transmembrane anchor 45 101 - -
Bpe13g00831 228 TIGRFAM Rieske_proteo: ubiquinol-cytochrome c reductase, iron-sulfur subunit 84 228 IPR006317 GO:0008121
Bpe13g00831 228 Pfam Ubiquinol cytochrome reductase transmembrane region 54 99 IPR004192 GO:0008121
Bpe13g00831 228 Gene3D - 97 228 IPR036922 GO:0051537
Bpe13g00831 228 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 158 226 IPR017941 GO:0051537
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00831 K00411 UQCRFS1, RIP1, petA; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8] - mnt:21396318 413.69
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe13g00831 Bpe14g00818 CCT
Bpe13g00831 Bpe14g00818 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe13g00831 Bpe-Chr13:14584741 Bpe14g01365 Bpe-Chr14:11019996 4.41E-142 dispersed
Bpe13g00831 Bpe-Chr13:14584741 Bpe14g00818 Bpe-Chr14:6192324 5.96E-150 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1355 . . . . Bpe13g00831 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo02g00210 . . . Bpe14g00818 . . Bma06g01326 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002683 1 2 2 4 3 2 0 2 2 0 1 2 3 2 2 3 2 3 2 2 2 2 1 1 2 2 2 3 2 1 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00831 Bpe_Chr13 FPKM 1.606843 0.0 2.34766 3.023912 0.0 0.0 1.966775 0.727904 0.426968 0.695317