Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00839 ATGGCGGCGAGAACCGGGAGAGAGAAACAACGGTACGAAGATGATTTCAGGCTCGTCGCAGGATGCATACCGTACAAGATTGACAGGAAGATTAAACGGGATAATCTGCTTGTTCTCATGATTTCTTCCCCAAATAAAGATTATCTCGTCTTTCCAAAGGGTGGCTGGGAAGACGACGAGACCATAGCCGAAGCAGCTTCCCGGGAGGCCTTCGAGGAAGCCGGCGTCAAAGGAATACTTGCAGAAACTCCACTTGGGGTTTGGGAGTTTAGAAGCAAGAGCAGAGAGAAGATGAGCAGTTCCGGCACCGACGGAAGTTGCAGAGGTTATATGTTTGGAATGGAGGTGACCCAAGAGCTCGAATTCTGGCCAGAACGCTCTAATTATCACAGAAAATGGGTGAACGCAGAGGAGGCATTCAGATTCTGCAGGTACGACTGGATGAGAGAAGCTCTTCACAGACTTCTAGTTTCTCTCTCTGTTTCAAACGATATTGACTTGGCTGACTCACTCCCATGA 519 48.75 MAARTGREKQRYEDDFRLVAGCIPYKIDRKIKRDNLLVLMISSPNKDYLVFPKGGWEDDETIAEAASREAFEEAGVKGILAETPLGVWEFRSKSREKMSSSGTDGSCRGYMFGMEVTQELEFWPERSNYHRKWVNAEEAFRFCRYDWMREALHRLLVSLSVSNDIDLADSLP 172
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 14623360 14624368 - Bpe010529.1 Bpe13g00839 113619

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00839 172 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 1 158 - -
Bpe13g00839 172 ProSiteProfiles Nudix hydrolase domain profile. 15 156 IPR000086 -
Bpe13g00839 172 Pfam NUDIX domain 30 154 IPR000086 -
Bpe13g00839 172 ProSitePatterns Nudix box signature. 54 75 IPR020084 GO:0016787
Bpe13g00839 172 PANTHER DIPHOSPHOINOSITOL POLYPHOSPHATE PHOSPHOHYDROLASE 1 159 - -
Bpe13g00839 172 SUPERFAMILY Nudix 11 156 IPR015797 -
Bpe13g00839 172 CDD Nudix_Hydrolase_9 18 149 - -
Bpe13g00839 172 PANTHER NUDIX HYDROLASE 12, MITOCHONDRIAL 1 159 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00839 K07766 E3.6.1.52; diphosphoinositol-polyphosphate diphosphatase [EC:3.6.1.52] - jre:108997296 225.713
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe12g00647 Bpe-Chr12:12128919 Bpe13g00839 Bpe-Chr13:14623360 1.05E-41 dispersed
Bpe13g00839 Bpe-Chr13:14623360 Bpe14g00072 Bpe-Chr14:1163740 7.23E-38 dispersed
Bpe13g00839 Bpe-Chr13:14623360 Bpe04g01958 Bpe-Chr4:24445941 2.07E-46 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1371 . . . Bda11g00366 Bpe13g00839 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g00366 . . . Bma06g01317 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004911 1 2 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 4 4 2 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00839 Bpe_Chr13 FPKM 10.217647 11.142392 11.65327 11.943188 16.626806 19.884172 16.185038 22.081383 22.628227 21.334644