Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00852 ATGGGTGGTGAAGGAAACGTCTTAACTTTGAAACAAGTTTCGGAGCACAACACGCCCAAGGACTGTTGGCTAATCATCAATGGCAAAGTGTACGATGTGACCAAGTTCTTGGAAGACCATCCTGGTGGCGATGACGTTCTGTTATCCGCTACCGGAAAGGATGCAACTGATGATTTTGAAGATGTGGGTCACAGTGACAGTGCAAGAGACATGATGAACAAATACTATGTCGGTGAGATTGATTCCTCGACTATTCCAAAAAAATCAACTTACGTGCCTCCAAAACAGCCTTATTACAACCAGGACAAGACATCAGAGTTCATTGTTAAGCTCCTCCAATTCCTCGTCCCGCTCGCAATATTGGGTTTGGCTGTTGGAGTTCGCTTCTACACGAAATCAAGCTGA 405 44.94 MGGEGNVLTLKQVSEHNTPKDCWLIINGKVYDVTKFLEDHPGGDDVLLSATGKDATDDFEDVGHSDSARDMMNKYYVGEIDSSTIPKKSTYVPPKQPYYNQDKTSEFIVKLLQFLVPLAILGLAVGVRFYTKSS 134
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 14727354 14729409 - Bpe010541.1 Bpe13g00852 113632

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00852 134 Gene3D - 3 86 IPR036400 -
Bpe13g00852 134 PRINTS Cytochrome B5 signature 40 54 IPR001199 -
Bpe13g00852 134 PRINTS Cytochrome B5 signature 30 40 IPR001199 -
Bpe13g00852 134 PRINTS Cytochrome B5 signature 68 80 IPR001199 -
Bpe13g00852 134 PRINTS Cytochrome B5 signature 55 62 IPR001199 -
Bpe13g00852 134 SMART Cyt_b5_2 8 81 IPR001199 -
Bpe13g00852 134 PANTHER CYTOCHROME B5-LIKE 1 132 - -
Bpe13g00852 134 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 5 81 IPR001199 -
Bpe13g00852 134 Pfam Cytochrome b5-like Heme/Steroid binding domain 9 80 IPR001199 -
Bpe13g00852 134 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 6 91 IPR036400 -
Bpe13g00852 134 PANTHER CYTOCHROME B5 1 132 - -
Bpe13g00852 134 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 36 43 IPR018506 GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00852 K23490 CYB5; cytochrome b5 - qsu:112039863 254.218
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g01044 Bpe-Chr5:22990081 Bpe13g00852 Bpe-Chr13:14727354 1.27E-46 dispersed
Bpe13g00852 Bpe-Chr13:14727354 Bpe14g00928 Bpe-Chr14:6926252 1.21E-49 dispersed
Bpe03g00947 Bpe-Chr3:29081917 Bpe13g00852 Bpe-Chr13:14727354 2.35E-51 transposed
Bpe09g00396 Bpe-Chr9:5950730 Bpe13g00852 Bpe-Chr13:14727354 7.59E-18 transposed
Bpe13g01364 Bpe-Chr13:18880415 Bpe13g00852 Bpe-Chr13:14727354 1.96E-35 transposed
Bpe13g00852 Bpe-Chr13:14727354 Bpe14g00841 Bpe-Chr14:6314134 1.09E-74 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe13g00852 . 1 134 NADPH P450 reductases AT5G53560 69.4 1.5e-52 202.2
Bpe14g00841 . 1 115 NADPH P450 reductases AT5G53560 68.7 3.3e-44 174.5
Bpe14g00928 . 1 137 NADPH P450 reductases AT5G53560 52.6 1.4e-37 152.5
Bpe13g00852 . 1 134 NADPH P450 reductases AT5G48810 63.2 1.6e-49 192.2
Bpe03g00947 . 1 138 NADPH P450 reductases AT5G48810 57.0 9.5e-42 166.4
Bpe14g00841 . 1 115 NADPH P450 reductases AT5G48810 61.5 4.7e-41 164.1
Bpe13g00852 . 22 133 NADPH P450 reductases AT2G32720 81.3 4.5e-49 190.7
Bpe14g00841 . 22 115 NADPH P450 reductases AT2G32720 79.8 2.5e-39 158.3
Bpe13g01364 . 1 128 NADPH P450 reductases AT1G26340 60.4 2.0e-41 165.2
Bpe04g01356 BCT 2 281 NADPH P450 reductases AT5G17770 80.7 4.0e-132 467.6
Bpe03g01064 BCT 2 281 NADPH P450 reductases AT5G17770 80.7 5.2e-132 467.2
Bpe08g00318 . 7 302 NADPH P450 reductases AT5G17770 68.6 5.8e-115 410.6
Bpe13g00852 . 1 134 NADPH P450 reductases AT5G53560 69.4 1.5e-52 202.2
Bpe14g00841 . 1 115 NADPH P450 reductases AT5G53560 68.7 3.3e-44 174.5
Bpe14g00928 . 1 137 NADPH P450 reductases AT5G53560 52.6 1.4e-37 152.5
Bpe13g00852 . 1 134 NADPH P450 reductases AT5G48810 63.2 1.6e-49 192.2
Bpe03g00947 . 1 138 NADPH P450 reductases AT5G48810 57.0 9.5e-42 166.4
Bpe14g00841 . 1 115 NADPH P450 reductases AT5G48810 61.5 4.7e-41 164.1
Bpe13g00852 . 22 133 NADPH P450 reductases AT2G32720 81.3 4.5e-49 190.7
Bpe14g00841 . 22 115 NADPH P450 reductases AT2G32720 79.8 2.5e-39 158.3
Bpe13g01364 . 1 128 NADPH P450 reductases AT1G26340 60.4 2.0e-41 165.2
Bpe04g01356 BCT 2 281 NADPH P450 reductases AT5G17770 80.7 4.0e-132 467.6
Bpe03g01064 BCT 2 281 NADPH P450 reductases AT5G17770 80.7 5.2e-132 467.2
Bpe08g00318 . 7 302 NADPH P450 reductases AT5G17770 68.6 5.8e-115 410.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000252 4 9 3 5 3 5 9 4 4 3 4 4 8 5 5 9 5 6 9 4 5 4 5 5 4 4 4 10 5 2 156
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00852 Bpe_Chr13 FPKM 35.015827 38.292019 40.94194 44.455936 42.556839 42.548923 45.034687 35.573132 29.584156 33.484253