Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00860 ATGGCGGGGGTCTCTTTGAAGTGCGGGGACTGTGGAGCCCTATTGAGGTCTATGCAAGAAGCTCAAGAGCACGCAGAGCTCACTTCTCACTCCAATTTCTCCGAATCTACCGAAGCAGTCCTCAATCTCGTTTGCACCACATGTGCCAAACCCTGCCGATCCAAAACTGAAACGGACTTGCACACAAAAAGAACTGGCCATGCTGATTTTGCTGATAAGACTTCAGAAGCTGCAAAACCAATAAGTTTGGAGGTTCCCAAGGTAGCTGACGAAGCAGAGGAGGCTGCAGATGCTAGTCCTAGTCAGCCTGAAGAAATGGTTGTGCCAGAGGTTGACAAAAAGTTGCTTGAAGAACTTGAAGCAATGGGGTTCTCAACAGCTCGTGCCACACGCGCCCTTCATTACTCTGGTAATTCTGGTGTTGAGGCTGCTGTAAATTGGATAGTTGAACATGAAGACGATTCTGAGATAGATCAGATGCCTTTGGTACCTTTGAACACTAAGGCTGAAGCTCACAAGCCTTCTCTTTCACCTGAAGAAATAAAAGCTAAACAACAAGAGCTAAGAGAACGAGCCCGCAAGAAAAAAGAAGAGGAAGAAAAGAAAAAAGAGAGAGAAAGGGAAAAGGAGAGAATCCGAGTGGGGAAGGAGCTTTTAGAGGCAAAGAGAATTGAAGAAGATAATGAACGGAAAAGGATAATGGCTTTGCGAAAAGCTGAGAAGGATGAAGAGAAACGAGCTCGGGATAAAATTCGTCAAAAATTAGAGGAGGACAAGGCTGAAAGAAGAAGGAAGCTTGGATTGGCACCAGAAGATCCTTCTACTGTAAAACCTTATTCGCCTGTTGTTGAGGAGAAAAAGAGCATGTTGCCAGTTAGGCCTGCCACAAAGGCTGAGCAAATGCGAGAATGTTTGCGAACTCTTAAACAGCATCACAAGGCAAGTGCATTAAGACTAGTGAAGCGAGCATTCCAGACTCTTCTTACATACGTGGGGAATGTCGCCCGAAATCCTGGCGATGAAAAATTTAGAAAGATAAGACTCACTAACCAATCTTTCCAGGAAAGAGTTGGCGGATTGATAGGCGGAGTGGAGTTTCTGGAGCTGTGCGGGTTCGAGAAAACTGAAGGAGATGAGTTCTTGTTTCTGCCAAGAGAGAAAGTTGACATTGGGGTGTTGAACTCGGCTGGTTCAGAGCTGGACTCTGCTTTGAAGAATCCCTTTTTTGGGGTTCTTTAA 1239 45.44 MAGVSLKCGDCGALLRSMQEAQEHAELTSHSNFSESTEAVLNLVCTTCAKPCRSKTETDLHTKRTGHADFADKTSEAAKPISLEVPKVADEAEEAADASPSQPEEMVVPEVDKKLLEELEAMGFSTARATRALHYSGNSGVEAAVNWIVEHEDDSEIDQMPLVPLNTKAEAHKPSLSPEEIKAKQQELRERARKKKEEEEKKKEREREKERIRVGKELLEAKRIEEDNERKRIMALRKAEKDEEKRARDKIRQKLEEDKAERRRKLGLAPEDPSTVKPYSPVVEEKKSMLPVRPATKAEQMRECLRTLKQHHKASALRLVKRAFQTLLTYVGNVARNPGDEKFRKIRLTNQSFQERVGGLIGGVEFLELCGFEKTEGDEFLFLPREKVDIGVLNSAGSELDSALKNPFFGVL 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 14771340 14777078 + Bpe010548.1 Bpe13g00860 113640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00860 412 SUPERFAMILY PUG domain-like 298 408 IPR036339 -
Bpe13g00860 412 MobiDBLite consensus disorder prediction 169 210 - -
Bpe13g00860 412 SMART PGNneu 322 385 - -
Bpe13g00860 412 ProSitePatterns Zinc finger C2H2 type domain signature. 8 30 IPR013087 -
Bpe13g00860 412 MobiDBLite consensus disorder prediction 238 279 - -
Bpe13g00860 412 PANTHER F13M7.16 PROTEIN 1 412 - -
Bpe13g00860 412 Gene3D - 302 402 - -
Bpe13g00860 412 PANTHER F13M7.16 PROTEIN 1 412 - -
Bpe13g00860 412 Coils Coil 181 215 - -
Bpe13g00860 412 SMART uba_6 112 150 IPR015940 -
Bpe13g00860 412 Coils Coil 237 261 - -
Bpe13g00860 412 MobiDBLite consensus disorder prediction 173 210 - -
Bpe13g00860 412 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 110 151 IPR015940 -
Bpe13g00860 412 Gene3D - 112 157 - -
Bpe13g00860 412 MobiDBLite consensus disorder prediction 238 270 - -
Bpe13g00860 412 Pfam UBA/TS-N domain 116 148 IPR015940 -
Bpe13g00860 412 SUPERFAMILY UBA-like 90 163 IPR009060 GO:0005515
Bpe13g00860 412 CDD UBA_PUB_plant 110 158 - -
Bpe13g00860 412 Pfam PUB domain 320 389 IPR018997 -
Bpe13g00860 412 CDD PUB_UBA_plant 305 412 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe13g00860 Bpe-Chr13:14771340 Bpe11g00510 Bpe-Chr11:3937044 6.49E-06 dispersed
Bpe02g01976 Bpe-Chr2:21600762 Bpe13g00860 Bpe-Chr13:14771340 8.23E-10 transposed
Bpe10g00343 Bpe-Chr10:11057010 Bpe13g00860 Bpe-Chr13:14771340 2.59E-17 transposed
Bpe13g00860 Bpe-Chr13:14771340 Bpe14g00845 Bpe-Chr14:6329108 2.37E-25 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00860 K24348 - jre:109003439 629.787