Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00861 CATCATCCACATAGATTGCACGGGAAGCAAGGAGCGGGAGTAAGGGGCATTGTAGGCAGATTATCCATCGCTCTAGTCGTGCTTTTGATCTGCTCTGTATGTTTGTTAGTTTTCTCGACGAGCAATGGCAGTAGTGGATCCAACTCTCGCTCTAAGATTAACATTGAAGAACTTTGGAGAACGGCTGATTCTGGTGGTTGGAGACCTTCCTCGGCACCACGATCTGATTGGCCGCCTCCGCCAAATGAGAGCAATGGGTACCTACGAGTTCGCTGTAATGGTGGTTTAAACCAACAACGTACTGCGATATGTAATGCCGTTTTGGCGGCGAGGATTATGAATGCAACTCTTGTTCTGCCAGAATTGGACGCTAATTCCTTTTGGCATGATAAAAGCGGTTTCCATGGTATCTATGATGTTGATCATTTTATAAAGGCGTTGAGGTATGATGTAAGGATTGTGGAGACTATACCAGAGATTCGTAAAAGTGGAAAAACAAAGAAGATAAAAGCTGTACAGCTTCGCCCCCCTAGAGATGCTCCTGTAAGTTGGTACACCACCAAGGCACTTGAAGAGATGAAGGCGAATGGTGCTATCTATCTCACACCTTTCTCTCATCGCTTAGCTGAAGAAGTTGACAATCCTGAGTACCAAAGATTGAGATGCAGAGTCAATTATCATGCCTTGAGATTCAAGCCAAATATTATGAAATTAAGTCAATCTATAGTTGATAAGCTCAGAAATCAAGGCCATTTTATGTCTATTCACCTTCGCTTTGAAATGGATATGCTGGCATTTGCTGGGTGCTTTGACATATTCACTCCAGAAGAGCAAAAAATACTAAGAAAGTATCGAGAAGAAAATTTTGCCGAGAAAAAACTCATCTATAGTGAAAGAAGGGCTATTGGAAAATGCCCTTTAACTCCAGAAGAGGTTGGCCTTGTTTTACATGCGATGGGTTTTGACAACTCTACTCGAATTTACCTTGCAGCAGGCGAACTATTTGGTGGGGAACGGTTCATGAAACCATTCCGAGCTTTGTTTCCTCGCCTCGAAAATCATAGTTCTGTGGATTCTACAGACGAATTAGCTGAGAATACCCGAGGTTTAACCGGATCAGCTGTGGATTACATGGTTTGTCTTCTCTCAGACATCTTCATGCCAACATATGATGGACCAAGCAACTTTGCCAATAACCTGCTTGGCCACCGGCTTTACTATGGTTTTCGCACTACCATCAGGCCAGACAGGAAAAATCTTGCCCCTGTTTTTATTGACAGAGAGAGTGGCCGGAGCAAAGGTTTTGAAGCAGCCGTTAGATGGGTTATGCTCAAAACAAACTTTGGTGGGCCACACAAGCGAGTTTCACCTGAATCTTTCTACACTAATTCTTGGCCTGAATGTTTCTGCCAAATTTCACCAAAGGATTCTGCCCATAAGTGTCCGCCAGATGATGTTCTACAGATTCTAAACGGTCAGTTGGAAGGTGAAGAAAATGGCGACGCGTTGACCAAGACTAATTCCACGATATCTGCTGAAGAG 1542 43.64 HHPHRLHGKQGAGVRGIVGRLSIALVVLLICSVCLLVFSTSNGSSGSNSRSKINIEELWRTADSGGWRPSSAPRSDWPPPPNESNGYLRVRCNGGLNQQRTAICNAVLAARIMNATLVLPELDANSFWHDKSGFHGIYDVDHFIKALRYDVRIVETIPEIRKSGKTKKIKAVQLRPPRDAPVSWYTTKALEEMKANGAIYLTPFSHRLAEEVDNPEYQRLRCRVNYHALRFKPNIMKLSQSIVDKLRNQGHFMSIHLRFEMDMLAFAGCFDIFTPEEQKILRKYREENFAEKKLIYSERRAIGKCPLTPEEVGLVLHAMGFDNSTRIYLAAGELFGGERFMKPFRALFPRLENHSSVDSTDELAENTRGLTGSAVDYMVCLLSDIFMPTYDGPSNFANNLLGHRLYYGFRTTIRPDRKNLAPVFIDRESGRSKGFEAAVRWVMLKTNFGGPHKRVSPESFYTNSWPECFCQISPKDSAHKCPPDDVLQILNGQLEGEENGDALTKTNSTISAEE 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 14778079 14781695 - Bpe025253 Bpe13g00861 113641

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00861 514 PANTHER O-FUCOSYLTRANSFERASE 1 11 498 - -
Bpe13g00861 514 PANTHER OS02G0726500 PROTEIN-RELATED 11 498 - -
Bpe13g00861 514 MobiDBLite consensus disorder prediction 500 514 - -
Bpe13g00861 514 Pfam GDP-fucose protein O-fucosyltransferase 87 407 IPR019378 -
Bpe13g00861 514 PIRSF UCP009360 22 474 IPR024709 -
Bpe13g00861 514 CDD O-FucT_plant 87 412 IPR024709 -
Bpe13g00861 514 MobiDBLite consensus disorder prediction 493 514 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00861 - - - csv:101213004 863.603
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe13g00861 Bpe-Chr13:14778079 Bpe10g00260 Bpe-Chr10:9746805 3.25E-93 dispersed
Bpe13g00861 Bpe-Chr13:14778079 Bpe04g00274 Bpe-Chr4:1771964 4.45E-85 transposed
Bpe13g00861 Bpe-Chr13:14778079 Bpe04g01253 Bpe-Chr4:18283473 1.28E-84 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g998 . . . . . . . . . . . Cma14g01898 Car06g01064 Car14g01699 . Cpe08g00401 Cpe03g01597 Bhi01g00223 . . . . . . . . . . . . . . . . . Lsi05g01846 . . Cme06g00378 . . Bda11g00345 . . Bpe13g00861 . Bma06g01279 . Cmo06g01249 Cmo14g01951 . . . . . . . . . . . . . Cla05g00345 Cam05g0375 Cec05g0379 Cco05g0380 Clacu05g0369 Cmu05g0354 Cre05g0418 . Csa03g01090 Chy06g00360 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003688 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 3 2 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00861 Bpe_Chr13 FPKM 0.875318 0.381862 1.118435 1.491948 4.652674 6.466686 5.468135 2.288156 1.774419 0.96776