Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00870 ATGGCACTTTGTAATAAGCTAGGGAGCTTCTTTAGACAGACTATTTCTCAGAATGGACCAGCTTCAATGGCGCCTATGCTTAATTCTGCTCGCTACATGTCTTCAAAGCTTTTTATTGGAGGTCTTTCATATGGAACTGATGATCAATCTCTCAGGGATGCGTTTTCATCTTTTGGTGATGTTGTTGATGCAAAGGTGATTACTGATAGAGACACTGGCAGGTCTCGTGGATTTGGGTTTGTCAACTTTTCGAACGAAGAATCTGCTAGCTCTGCAATGTCTGCCATGGATGGTCAGGAGCTTAATGGGCGAAACATTCGAGTGAGTTTGGCAAATGATAGACCAGCTGCTCCTCGTGGTTATAGCGGCGGCGGTTTTAGAGGCGATGGAGGGTACGGAGGTGGGAATTCCTAT 414 45.41 MALCNKLGSFFRQTISQNGPASMAPMLNSARYMSSKLFIGGLSYGTDDQSLRDAFSSFGDVVDAKVITDRDTGRSRGFGFVNFSNEESASSAMSAMDGQELNGRNIRVSLANDRPAAPRGYSGGGFRGDGGYGGGNSY 138
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 14863010 14864049 + Bpe025254 Bpe13g00870 113650

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00870 138 SMART rrm1_1 36 109 IPR000504 GO:0003723
Bpe13g00870 138 MobiDBLite consensus disorder prediction 113 138 - -
Bpe13g00870 138 Gene3D - 17 138 IPR012677 -
Bpe13g00870 138 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 35 113 IPR000504 GO:0003723
Bpe13g00870 138 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 37 107 IPR000504 GO:0003723
Bpe13g00870 138 SUPERFAMILY RNA-binding domain, RBD 34 136 IPR035979 GO:0003676
Bpe13g00870 138 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL 1 136 - -
Bpe13g00870 138 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 1 136 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00870 - - - qlo:115950521 170.244
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe13g00870 Bpe14g00853 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00756 Bpe-Chr7:14085270 Bpe13g00870 Bpe-Chr13:14863010 8.31E-37 dispersed
Bpe12g00080 Bpe-Chr12:557093 Bpe13g00870 Bpe-Chr13:14863010 1.15E-29 dispersed
Bpe12g00676 Bpe-Chr12:12397304 Bpe13g00870 Bpe-Chr13:14863010 9.21E-12 dispersed
Bpe13g00312 Bpe-Chr13:10986507 Bpe13g00870 Bpe-Chr13:14863010 3.07E-37 dispersed
Bpe13g00870 Bpe-Chr13:14863010 Bpe15g00581 Bpe-Chr15:16771819 1.65E-36 dispersed
Bpe15g01359 Bpe-Chr15:21624661 Bpe13g00870 Bpe-Chr13:14863010 5.73E-20 dispersed
Bpe13g00870 Bpe-Chr13:14863010 Bpe14g00853 Bpe-Chr14:6375160 1.74E-40 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g925 . . . . . Bpe14g00853 . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag0247 . Cone7ag0411 . . . . . . . Bda11g00323 . . Bpe13g00870 Bma02g01195 Bma06g01271 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000800 6 2 2 5 5 2 3 2 2 3 2 2 5 3 2 4 2 6 3 2 2 3 3 2 2 2 2 8 3 2 92
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00870 Bpe_Chr13 FPKM 4.594168 4.76675 0.730773 0.975393 0.0 0.0 1.703876 0.0 0.0 0.0