Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00903 ATGGGTCACCTTAGCTTACCCGCTTCCAAGCGAAACTTGAGGCAATGGCGGGTTTTGGACATTGTGTCGGCAGTATTCTTCGGACTGGTCTTTCTCTTCTTCCTCATGGTATTCACGCGGCTTGGCGATTCGCTTGCCGCTTCTGGTCGCCAAGCTCTGCTTATGTCTACTTCTGATCCTCAACAGCGCCATCGCCTCATCGCACTTGTGGAGTCTGGGCAGCAGCAGGACATCGAGTCTTGCCTTGCAGAGGCAGTCGACCACATGCCCTGCGAAGATCCGAGGCTGAATAGTCAATTGAGCCGGGAAATGAATTACTATCGGGAGCGGCATTGTCCATTGCCCGAGGATACGCCCCTCTGCCTTATCCCGCCGCCTGAAGATTACAAAATTCCAGTCCAGTGGCCTGAGAGCTTGCACAAGATATGGCACAGCAACATGCCTCATAACAAAATTGCAGACCGAAAAGGTCATCAAGGATGGATGAAAAGAGAGGGTCCATATTTTATTTTCCCTGGTGGTGGTACGATGTTCCCTGATGGCGCAGTTCAATATATCGAAAAACTTGGACAATACATTCCAATAAATGGCGGTACTCTTAGGACCGCACTCGATATGGGTTGTGGGGTTGCTAGTTTTGGCGGATACATGCTATCTCAAGACATTTTAACTATGTCATTTGCTCCAAGAGATTCACACAAAGCACAGATACAATTTGCACTAGAAAGAGGCATTCCAGCATTTGTTGCCATGCTTGGAACTCGCAGACTCCCATTTCCCGCTTTCTCATATGATCTAGTGCATTGCTCCCGATGTTTAATCCCATTTACGGCCAACAATGCTACTTACTTCATGGAAGTAGATAGGCTACTTCGGCCAGGGGGATATCTAGTCATATCTGGTCCTCCTGTACAGTGGCCTAAGCAAGACAAGGAATGGGCAGATCTCCAAGGTGTTGCTAGAGCATTATGTTATGAGCTGCTTGCAGTGGATGGGAATACTGTTATTTGGAAAAAGCCTTCTGGAGATTCATGTCTTCCTAGCCAAAATGATTTTGGTCTTCAATTGTGTGATGATTCAGACGAGCCAAGCTATGCATGGTATTTCAAATTGAAGAAATGCGTCAGTAGAATGTCTTCTATCAAGGGAGAGTATGCTGTTGGCAGCATTCCTAAGTGGCCAGCAAGACTAACAAAAGCTCCATCACGGGCAGCCATTATGAAAAATGGTGTTGATGTTTTTGAGGCAGACACTCGCCGGTGGGAAAGGAGGATCACCTATTATAAACAATCGTTAAATCTGAAGCTGGGAACTCCATCAGTGCGCAATATCATGGATATGAATGCCTTTTTTGGTGGTTTTGCTGCAGCCCTTAAATCCGACCAAGTTTGGGTTATGAATGTTGTTCCACCTCGCAAATCATCGACCTTGGCTGTCATTTTTGACAGAGGCCTGATTGGAGTCTACCATGATTGGTGTGAACCATTCTCAACATATCCTCGGACTTATGATTTTATACATGTGTCCGGTATTGAATCTCTCATAAGTTTTCCAGGGTCGGACAAGAGCAGGTGTAATCTAGTGGATCTGATGGTGGAGATGGATCGAATCTTACGTCCTGAAGGAACTGTTGTGGTTAGAGACTCCCCTGAAGTCATCGACAGAGTTGCTCGGATAGCTCGAGCTGTGAGATGGACGACGACCATTCATGAAAATGAACCGGAATCACAAGCACGAGAGAAAATTCTGGCTGCAACAAAAAGTTATGGGAAGCTGCTTTAA 1782 46.3 MGHLSLPASKRNLRQWRVLDIVSAVFFGLVFLFFLMVFTRLGDSLAASGRQALLMSTSDPQQRHRLIALVESGQQQDIESCLAEAVDHMPCEDPRLNSQLSREMNYYRERHCPLPEDTPLCLIPPPEDYKIPVQWPESLHKIWHSNMPHNKIADRKGHQGWMKREGPYFIFPGGGTMFPDGAVQYIEKLGQYIPINGGTLRTALDMGCGVASFGGYMLSQDILTMSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSYDLVHCSRCLIPFTANNATYFMEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQGVARALCYELLAVDGNTVIWKKPSGDSCLPSQNDFGLQLCDDSDEPSYAWYFKLKKCVSRMSSIKGEYAVGSIPKWPARLTKAPSRAAIMKNGVDVFEADTRRWERRITYYKQSLNLKLGTPSVRNIMDMNAFFGGFAAALKSDQVWVMNVVPPRKSSTLAVIFDRGLIGVYHDWCEPFSTYPRTYDFIHVSGIESLISFPGSDKSRCNLVDLMVEMDRILRPEGTVVVRDSPEVIDRVARIARAVRWTTTIHENEPESQAREKILAATKSYGKLL 593
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 15064913 15070017 + Bpe010587.1 Bpe13g00903 113683

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00903 593 PANTHER METHYLTRANSFERASE PMT13-RELATED 12 590 - -
Bpe13g00903 593 Gene3D Vaccinia Virus protein VP39 177 330 IPR029063 -
Bpe13g00903 593 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 12 590 IPR004159 GO:0008168
Bpe13g00903 593 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 87 587 IPR004159 GO:0008168
Bpe13g00903 593 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 436 556 IPR029063 -
Bpe13g00903 593 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 109 315 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00903 K23872 QUA3; putative homogalacturonan methyltransferase [EC:2.1.1.-] - csv:101205635 1039.64
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe13g00903 Bpe-Chr13:15064913 Bpe08g00920 Bpe-Chr8:11641499 1.29E-163 dispersed
Bpe14g00998 Bpe-Chr14:7370364 Bpe13g00903 Bpe-Chr13:15064913 1.78E-120 dispersed
Bpe13g00903 Bpe-Chr13:15064913 Bpe11g00386 Bpe-Chr11:2929960 5.93E-166 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g874 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe13g00903 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006889 1 1 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00903 Bpe_Chr13 FPKM 5.334635 6.071209 1.730932 2.298298 2.83148 2.615442 3.194486 1.208733 1.662993 0.620716