Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00917 GTTTGTTTCCATCAGGGAACCTCTGCAGATTCATCAACTTCGTCGAAGATCGTCCTCTACTCTTTCTGGCAGAGCTCTTGCTCTTGGCGAGTACGTTTCGCTCTGAATCTCAAAGGGCTTTCGTACGATTACAGATCGGTAAACCTAGCAAAAGGTGAAAATTTTAGTCCAGAATTCGAGCGTTTAAACCCTCTTAAGTATGTCCCAGTATTAGTGGATGGGGATGTGGTTCTGTCGGACTCCTTTGCAATACTTCTGTATTTGGAAGAGAAGTATCATCAAAAACCATTATTGCCTGCTGATCCTCAGCTTAGAGCTCTTAATCTTCAGGCTGCGAGTGTGGTTACTTCTAGCATACAACCTCTAATTATGTTGGCCTTGCTGAAATCTATTGAGGAAAAAGTTGGTCCTGAAAAACAACAATTGTGGGCTCAGTCCACCATAGAAAAAGGTTTTTCTGCTCTAGAGAAGTTGCTGAAGAATTTTGCTGGAACTTATTCCACTGGGGAAGAAGTGTATATGGCTGATGTGTTCTTGGCCCCCCAGATTGCTATTGCAATTACCAAGTTCAAAATTGACATGTCCAAGTTCCCTCTTTTAGGAAGGCTGTTTGAATCGTACAAGACCTTACCAGAATTCCAAGCCTCCCAGCCCGATCGACAACCTGATGCATTCCAT 678 43.22 VCFHQGTSADSSTSSKIVLYSFWQSSCSWRVRFALNLKGLSYDYRSVNLAKGENFSPEFERLNPLKYVPVLVDGDVVLSDSFAILLYLEEKYHQKPLLPADPQLRALNLQAASVVTSSIQPLIMLALLKSIEEKVGPEKQQLWAQSTIEKGFSALEKLLKNFAGTYSTGEEVYMADVFLAPQIAIAITKFKIDMSKFPLLGRLFESYKTLPEFQASQPDRQPDAFH 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 15139484 15145528 + Bpe025257 Bpe13g00917 113697

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00917 226 Pfam Glutathione S-transferase, N-terminal domain 19 96 IPR004045 -
Bpe13g00917 226 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 15 96 IPR004045 -
Bpe13g00917 226 SFLD Glutathione Transferase (cytosolic) 18 204 IPR040079 -
Bpe13g00917 226 Gene3D Glutaredoxin 19 95 - -
Bpe13g00917 226 TIGRFAM maiA: maleylacetoacetate isomerase 19 224 IPR005955 GO:0003824|GO:0005737|GO:0009072
Bpe13g00917 226 CDD GST_N_Zeta 17 89 IPR034333 -
Bpe13g00917 226 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 101 225 IPR010987 -
Bpe13g00917 226 SUPERFAMILY Thioredoxin-like 14 100 IPR036249 -
Bpe13g00917 226 Pfam Glutathione S-transferase, C-terminal domain 138 214 IPR004046 -
Bpe13g00917 226 SFLD Main (cytGST) 18 204 - -
Bpe13g00917 226 PANTHER MALEYLACETOACETATE ISOMERASE 8 225 - -
Bpe13g00917 226 SUPERFAMILY GST C-terminal domain-like 96 224 IPR036282 -
Bpe13g00917 226 CDD GST_C_Zeta 102 221 IPR034330 -
Bpe13g00917 226 PANTHER GLUTATHIONE S-TRANSFERASE 2-LIKE ISOFORM X1 8 225 - -
Bpe13g00917 226 Gene3D - 98 226 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00917 K01800 maiA, GSTZ1; maleylacetoacetate isomerase [EC:5.2.1.2] - pvy:116128110 324.324
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe11g01706 Bpe-Chr11:13332090 Bpe13g00917 Bpe-Chr13:15139484 1.16E-94 dispersed
Bpe12g00457 Bpe-Chr12:10322389 Bpe13g00917 Bpe-Chr13:15139484 4.01E-11 dispersed
Bpe13g00917 Bpe-Chr13:15139484 Bpe09g00277 Bpe-Chr9:2088881 7.32E-12 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe06g00515 . 1 209 Glutathione S-transferase Gene Family AT4G02520 57.5 5.1e-63 237.7
Bpe06g00513 . 1 209 Glutathione S-transferase Gene Family AT4G02520 55.7 9.6e-62 233.4
Bpe06g00515 . 1 210 Glutathione S-transferase Gene Family AT2G02930 57.3 2.3e-63 238.8
Bpe06g00513 . 1 210 Glutathione S-transferase Gene Family AT2G02930 55.4 3.3e-62 235.0
Bpe06g00513 . 5 206 Glutathione S-transferase Gene Family AT1G02950 54.2 5.4e-59 224.6
Bpe06g00515 . 5 206 Glutathione S-transferase Gene Family AT1G02950 55.2 9.1e-59 223.8
Bpe06g00515 . 1 210 Glutathione S-transferase Gene Family AT1G02930 55.2 8.8e-60 226.9
Bpe06g00513 . 1 210 Glutathione S-transferase Gene Family AT1G02930 54.8 2.0e-59 225.7
Bpe06g00515 . 1 210 Glutathione S-transferase Gene Family AT1G02920 54.8 2.3e-60 228.8
Bpe06g00513 . 1 210 Glutathione S-transferase Gene Family AT1G02920 54.3 4.0e-60 228.0
Bpe06g00513 . 1 213 Glutathione S-transferase Gene Family AT2G47730 58.9 1.9e-67 252.7
Bpe06g00515 . 1 213 Glutathione S-transferase Gene Family AT2G47730 57.9 1.2e-66 250.0
Bpe11g01239 . 1 212 Glutathione S-transferase Gene Family AT3G03190 58.5 6.7e-71 263.8
Bpe11g01239 . 1 214 Glutathione S-transferase Gene Family AT5G17220 59.3 7.1e-73 270.4
Bpe02g00874 . 3 216 Glutathione S-transferase Gene Family AT3G09270 57.2 9.1e-71 263.5
Bpe12g00457 . 3 226 Glutathione S-transferase Gene Family AT1G74590 50.4 1.6e-65 246.1
Bpe09g00278 . 1 216 Glutathione S-transferase Gene Family AT1G78380 69.9 1.0e-90 329.7
Bpe09g00277 . 1 215 Glutathione S-transferase Gene Family AT1G78380 64.7 1.2e-83 306.2
Bpe03g00861 . 2 217 Glutathione S-transferase Gene Family AT1G78380 64.4 4.6e-83 304.3
Bpe09g00278 . 1 214 Glutathione S-transferase Gene Family AT1G78370 63.1 2.7e-80 295.0
Bpe09g00277 . 1 218 Glutathione S-transferase Gene Family AT1G78370 61.9 1.0e-79 293.1
Bpe03g00861 . 2 215 Glutathione S-transferase Gene Family AT1G78370 61.2 3.4e-78 288.1
Bpe09g00278 . 1 216 Glutathione S-transferase Gene Family AT1G78340 64.8 4.9e-85 310.8
Bpe09g00277 . 1 217 Glutathione S-transferase Gene Family AT1G78340 63.6 1.5e-81 299.3
Bpe03g00861 . 2 217 Glutathione S-transferase Gene Family AT1G78340 59.7 3.4e-78 288.1
Bpe09g00278 . 1 214 Glutathione S-transferase Gene Family AT1G78320 53.7 1.9e-61 232.3
Bpe03g00861 . 2 215 Glutathione S-transferase Gene Family AT1G78320 52.3 1.5e-58 222.6
Bpe09g00277 . 1 211 Glutathione S-transferase Gene Family AT1G78320 51.2 3.2e-56 214.9
Bpe09g00278 . 1 219 Glutathione S-transferase Gene Family AT1G17180 64.4 1.8e-87 318.9
Bpe03g00861 . 2 220 Glutathione S-transferase Gene Family AT1G17180 63.0 1.2e-83 306.2
Bpe09g00277 . 1 215 Glutathione S-transferase Gene Family AT1G17180 61.9 8.7e-82 300.1
Bpe09g00278 . 3 217 Glutathione S-transferase Gene Family AT1G17190 58.6 3.2e-76 281.6
Bpe03g00861 . 4 218 Glutathione S-transferase Gene Family AT1G17190 54.9 9.0e-71 263.5
Bpe09g00277 . 3 215 Glutathione S-transferase Gene Family AT1G17190 54.9 9.0e-71 263.5
Bpe09g00278 . 3 214 Glutathione S-transferase Gene Family AT3G43800 53.7 1.3e-64 243.0
Bpe09g00277 . 3 217 Glutathione S-transferase Gene Family AT3G43800 52.5 1.4e-63 239.6
Bpe03g00861 . 4 215 Glutathione S-transferase Gene Family AT3G43800 50.5 2.1e-59 225.7
Bpe09g00278 . 4 219 Glutathione S-transferase Gene Family AT1G53680 59.2 2.4e-71 265.4
Bpe09g00277 . 4 217 Glutathione S-transferase Gene Family AT1G53680 58.1 2.3e-69 258.8
Bpe03g00861 . 6 220 Glutathione S-transferase Gene Family AT1G53680 54.8 5.0e-69 257.7
Bpe11g01706 . 60 231 Glutathione S-transferase Gene Family AT2G02390 57.0 8.4e-57 216.9
Bpe13g00917 . 58 224 Glutathione S-transferase Gene Family AT2G02390 53.9 4.9e-49 191.0
Bpe11g01706 . 18 230 Glutathione S-transferase Gene Family AT2G02380 60.1 3.7e-72 268.1
Bpe13g00917 . 15 223 Glutathione S-transferase Gene Family AT2G02380 53.6 1.0e-61 233.4
Bpe05g00640 . 1 244 Glutathione S-transferase Gene Family AT5G41210 67.2 2.6e-95 345.1
Bpe05g00640 . 1 244 Glutathione S-transferase Gene Family AT5G41240 67.2 4.5e-93 339.0
Bpe04g01862 . 8 223 Glutathione S-transferase Gene Family AT5G02780 63.8 1.8e-77 285.8
Bpe04g01862 . 6 225 Glutathione S-transferase Gene Family AT3G55040 67.0 7.9e-83 303.9
Bpe04g01862 . 2 227 Glutathione S-transferase Gene Family AT5G02790 63.4 2.4e-82 302.0
Bpe15g01095 . 1 211 Glutathione S-transferase Gene Family AT1G19570 66.0 1.7e-82 302.4
Bpe04g01694 . 1 233 Glutathione S-transferase Gene Family AT1G19570 57.7 9.6e-78 286.6
Bpe02g01375 . 6 213 Glutathione S-transferase Gene Family AT1G19570 58.9 8.7e-71 263.5
Bpe15g01095 . 1 212 Glutathione S-transferase Gene Family AT1G75270 70.0 3.3e-86 314.7
Bpe04g01694 . 1 233 Glutathione S-transferase Gene Family AT1G75270 64.5 3.4e-83 304.7
Bpe02g01375 . 6 213 Glutathione S-transferase Gene Family AT1G75270 58.9 7.9e-72 266.9
Bpe02g01375 . 2 215 Glutathione S-transferase Gene Family AT5G16710 75.7 8.3e-100 360.1
Bpe04g01694 . 3 232 Glutathione S-transferase Gene Family AT5G16710 54.3 2.6e-69 258.8
Bpe15g01095 . 3 210 Glutathione S-transferase Gene Family AT5G16710 56.7 4.4e-69 258.1
Bpe02g00628 . 1 268 Glutathione S-transferase Gene Family AT1G77290 66.5 2.4e-102 368.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000862 1 6 2 2 2 2 3 2 2 2 1 1 3 3 3 3 1 3 3 2 3 2 3 3 4 2 3 8 7 3 85
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00917 Bpe_Chr13 FPKM 6.653824 6.458273 5.645736 5.24069 7.025959 4.537813 8.583184 3.034828 3.048201 3.127963