Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00947 ATGGCTGGAATTACGTTATCTATGTTGAAGATGCCACTGTGTGATTGGAAGTCACGTTCCTTTCAATGTTTCGAGTATATTGAATGTGGAAATTATGCTCATCGTCTTCATGTAACTTTCAGATCATCGTTTGCTCTTCGAAATCACAAGTATCACTCAACTCTGAAATCTGAAAATATTGCCACTACCCATTCCGGAGCAGCATGTACAGAACCTCCGGCTGCCAAAAACTATTATAAAACCAAACCCTTGACTGCATTTTTACTCATGTATTCAAATTCGCAATTACGAAATACTGTTCCTCTTTCTATGTCAAACCCACTATATAATTATCGATCATATTCATCATCATCTGGTAATAAAGTGGGGGACTACAGAGATGTAGGAATTAAGGCAGCATCTGGCACTGATGAAGGGGATGTTAATACCACGAGCATTCTTGGAGGTGATTTGCATGAAAAAGTTAAGGATGCTTATCAAAGTGCTGTAGAAGCTGTATCATTTTCTGGGCAGAGGGCAAAAGAAGTATCTGATGAATGGACACCTTATATTGATCAATTGTTTGATGCACATCCATATCTCAAAAATGTGATTGTTCCGGTGAGTTCTACATTGACTGCTTCTGTTTTGGCGTGGGTGGTGATGCCTAAGGTGTTGAGAAGATTTCATAAGTATGCAACATCAGGTCCGGCAGCTCTTCTCTCTGGCAGTCTATTAGGAGAACCGATTCCTTACGAGAAGACCTTTTGGGGTGCCTTAGAGGACCCCGTTCGATATCTTACGACGTTCATTGCATTCACGCAAATTGGCATGATGGTAGCACCAACAAGTATAGCATCGCAATATGTTATACAGGCCTCCAGGGGAGCAGTTATTGTATCCTTGGTTTGGTTTTTGTATCGATGGAAAACAAATGTGCTAACCCGTGCATTGGCTACAAAGAATGCGGCAGGGTTTGATCGGGATAGGTTACTGGCTCTGGATAAACTTTCATCCATTGGACTATTTGTCCTTGGCTTAATGGCTTTTGCGGAAGCTTGTGGTGTGGCTGTTCAGTCTATTCTTACTGTTGGTGGAATTGGAGGTGAGATCCAGCTTCTTATAAATTTGTGCACTCGTGTGATCAAATTTCATCTTTCTTTCTTGTATTCAGGAGTCGCTACTGCTTTTGCTGCAAAGGACGTCCTCGGAAATGTCCTTAGTGGTTTGGTCATGCAATTTTCGAAGCCCTTCTCAATTGGAGACACAATAAAGGCTGGATCGATAGAAGGTCAGGTGGTTGAAATGGGACTAACGACAACATCGTTGCTTAGTGCTGAGAAATTTCCTGTTATCGTTCCTAATTCGCTGTTCTCTAGCCAGCAGGTTATTACGAACAAATCACGAGCTCAATGGCGATCGATGACCAATAAAATCCCTCTGCAAGTTGATGATTTCAGTAAGATTACTCAAATAGGAGAAGAGATAAAGAGTATGCTAAGATCAAACCCAAATTTCAACTTCACCAGCCACTTCACCCTCTTTGATATGAAAGAGTGCCCAGTGAATAGTGATCCATCCGTTGCCTTTGTACAGATAAAGGAGGTACACGTCGGGCGGCGGTTCATCAGTCTTGTATTCAAAACAAATCTAACCGACGTCGTTATCGCCGGCGGTAATCCTTGTTATTCATTACATGATCAATCAAGTTGTAATGGAAGACCTATTGTAACTGCCACAGCTCGATTTGAAATCAAGGGTTACGATTATTTTGCAGATTCTTGCACCAACACAAGGATTGAAGATTGTTACATAGTATCAGGGGATGACTGCGTTGCGGGTGGAAAATGCAACATGGCAGCGAGATTGGAGGGAATTTCCGGCTATCCATTCCCGGGTATTTGCATTTCAAACGTCACAATTACAATGACTAGTACTGATGACAAAGGAATAACAAGCAGAGTTACCCCTCAACCATGCCCTCTGCTACTGGACTCGGGGCCGGAGAAGATTACTGATTGTGATTTTCCGGATGATAGGCTGCCTATCCATGCCGTTGAACTCAAACATTGCTCTAAAATTATGGCAACTGAAATATTTCGCTATAACATGCTATCGGACAAGATTTGCACTTCTCCGTAA 2121 42.1 MAGITLSMLKMPLCDWKSRSFQCFEYIECGNYAHRLHVTFRSSFALRNHKYHSTLKSENIATTHSGAACTEPPAAKNYYKTKPLTAFLLMYSNSQLRNTVPLSMSNPLYNYRSYSSSSGNKVGDYRDVGIKAASGTDEGDVNTTSILGGDLHEKVKDAYQSAVEAVSFSGQRAKEVSDEWTPYIDQLFDAHPYLKNVIVPVSSTLTASVLAWVVMPKVLRRFHKYATSGPAALLSGSLLGEPIPYEKTFWGALEDPVRYLTTFIAFTQIGMMVAPTSIASQYVIQASRGAVIVSLVWFLYRWKTNVLTRALATKNAAGFDRDRLLALDKLSSIGLFVLGLMAFAEACGVAVQSILTVGGIGGEIQLLINLCTRVIKFHLSFLYSGVATAFAAKDVLGNVLSGLVMQFSKPFSIGDTIKAGSIEGQVVEMGLTTTSLLSAEKFPVIVPNSLFSSQQVITNKSRAQWRSMTNKIPLQVDDFSKITQIGEEIKSMLRSNPNFNFTSHFTLFDMKECPVNSDPSVAFVQIKEVHVGRRFISLVFKTNLTDVVIAGGNPCYSLHDQSSCNGRPIVTATARFEIKGYDYFADSCTNTRIEDCYIVSGDDCVAGGKCNMAARLEGISGYPFPGICISNVTITMTSTDDKGITSRVTPQPCPLLLDSGPEKITDCDFPDDRLPIHAVELKHCSKIMATEIFRYNMLSDKICTSP 706
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 15348318 15360330 - Bpe010629.1 Bpe13g00947 113727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00947 706 Gene3D - 410 459 IPR023408 -
Bpe13g00947 706 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 288 362 IPR011014 GO:0016020
Bpe13g00947 706 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 109 500 - -
Bpe13g00947 706 SUPERFAMILY Sm-like ribonucleoproteins 394 457 IPR010920 -
Bpe13g00947 706 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 1, MITOCHONDRIAL-RELATED 109 500 - -
Bpe13g00947 706 Pfam Mechanosensitive ion channel 384 500 IPR006685 GO:0016020|GO:0055085
Bpe13g00947 706 Gene3D - 282 373 - -
Bpe13g00947 706 SUPERFAMILY Pectin lyase-like 538 656 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe13g00947 Bpe-Chr13:15348318 Bpe14g00990 Bpe-Chr14:7320496 2.08E-12 wgd
Bpe13g00947 Bpe-Chr13:15348318 Bpe05g00655 Bpe-Chr5:20316390 4.92E-11 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00947 K22047 - vvi:100261915 509.22