Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00947 ATGGCTGGAATTACGTTATCTATGTTGAAGATGCCACTGTGTGATTGGAAGTCACGTTCCTTTCAATGTTTCGAGTATATTGAATGTGGAAATTATGCTCATCGTCTTCATGTAACTTTCAGATCATCGTTTGCTCTTCGAAATCACAAGTATCACTCAACTCTGAAATCTGAAAATATTGCCACTACCCATTCCGGAGCAGCATGTACAGAACCTCCGGCTGCCAAAAACTATTATAAAACCAAACCCTTGACTGCATTTTTACTCATGTATTCAAATTCGCAATTACGAAATACTGTTCCTCTTTCTATGTCAAACCCACTATATAATTATCGATCATATTCATCATCATCTGGTAATAAAGTGGGGGACTACAGAGATGTAGGAATTAAGGCAGCATCTGGCACTGATGAAGGGGATGTTAATACCACGAGCATTCTTGGAGGTGATTTGCATGAAAAAGTTAAGGATGCTTATCAAAGTGCTGTAGAAGCTGTATCATTTTCTGGGCAGAGGGCAAAAGAAGTATCTGATGAATGGACACCTTATATTGATCAATTGTTTGATGCACATCCATATCTCAAAAATGTGATTGTTCCGGTGAGTTCTACATTGACTGCTTCTGTTTTGGCGTGGGTGGTGATGCCTAAGGTGTTGAGAAGATTTCATAAGTATGCAACATCAGGTCCGGCAGCTCTTCTCTCTGGCAGTCTATTAGGAGAACCGATTCCTTACGAGAAGACCTTTTGGGGTGCCTTAGAGGACCCCGTTCGATATCTTACGACGTTCATTGCATTCACGCAAATTGGCATGATGGTAGCACCAACAAGTATAGCATCGCAATATGTTATACAGGCCTCCAGGGGAGCAGTTATTGTATCCTTGGTTTGGTTTTTGTATCGATGGAAAACAAATGTGCTAACCCGTGCATTGGCTACAAAGAATGCGGCAGGGTTTGATCGGGATAGGTTACTGGCTCTGGATAAACTTTCATCCATTGGACTATTTGTCCTTGGCTTAATGGCTTTTGCGGAAGCTTGTGGTGTGGCTGTTCAGTCTATTCTTACTGTTGGTGGAATTGGAGGTGAGATCCAGCTTCTTATAAATTTGTGCACTCGTGTGATCAAATTTCATCTTTCTTTCTTGTATTCAGGAGTCGCTACTGCTTTTGCTGCAAAGGACGTCCTCGGAAATGTCCTTAGTGGTTTGGTCATGCAATTTTCGAAGCCCTTCTCAATTGGAGACACAATAAAGGCTGGATCGATAGAAGGTCAGGTGGTTGAAATGGGACTAACGACAACATCGTTGCTTAGTGCTGAGAAATTTCCTGTTATCGTTCCTAATTCGCTGTTCTCTAGCCAGCAGGTTATTACGAACAAATCACGAGCTCAATGGCGATCGATGACCAATAAAATCCCTCTGCAAGTTGATGATTTCAGTAAGATTACTCAAATAGGAGAAGAGATAAAGAGTATGCTAAGATCAAACCCAAATTTCAACTTCACCAGCCACTTCACCCTCTTTGATATGAAAGAGTGCCCAGTGAATAGTGATCCATCCGTTGCCTTTGTACAGATAAAGGAGGTACACGTCGGGCGGCGGTTCATCAGTCTTGTATTCAAAACAAATCTAACCGACGTCGTTATCGCCGGCGGTAATCCTTGTTATTCATTACATGATCAATCAAGTTGTAATGGAAGACCTATTGTAACTGCCACAGCTCGATTTGAAATCAAGGGTTACGATTATTTTGCAGATTCTTGCACCAACACAAGGATTGAAGATTGTTACATAGTATCAGGGGATGACTGCGTTGCGGGTGGAAAATGCAACATGGCAGCGAGATTGGAGGGAATTTCCGGCTATCCATTCCCGGGTATTTGCATTTCAAACGTCACAATTACAATGACTAGTACTGATGACAAAGGAATAACAAGCAGAGTTACCCCTCAACCATGCCCTCTGCTACTGGACTCGGGGCCGGAGAAGATTACTGATTGTGATTTTCCGGATGATAGGCTGCCTATCCATGCCGTTGAACTCAAACATTGCTCTAAAATTATGGCAACTGAAATATTTCGCTATAACATGCTATCGGACAAGATTTGCACTTCTCCGTAA 2121 42.1 MAGITLSMLKMPLCDWKSRSFQCFEYIECGNYAHRLHVTFRSSFALRNHKYHSTLKSENIATTHSGAACTEPPAAKNYYKTKPLTAFLLMYSNSQLRNTVPLSMSNPLYNYRSYSSSSGNKVGDYRDVGIKAASGTDEGDVNTTSILGGDLHEKVKDAYQSAVEAVSFSGQRAKEVSDEWTPYIDQLFDAHPYLKNVIVPVSSTLTASVLAWVVMPKVLRRFHKYATSGPAALLSGSLLGEPIPYEKTFWGALEDPVRYLTTFIAFTQIGMMVAPTSIASQYVIQASRGAVIVSLVWFLYRWKTNVLTRALATKNAAGFDRDRLLALDKLSSIGLFVLGLMAFAEACGVAVQSILTVGGIGGEIQLLINLCTRVIKFHLSFLYSGVATAFAAKDVLGNVLSGLVMQFSKPFSIGDTIKAGSIEGQVVEMGLTTTSLLSAEKFPVIVPNSLFSSQQVITNKSRAQWRSMTNKIPLQVDDFSKITQIGEEIKSMLRSNPNFNFTSHFTLFDMKECPVNSDPSVAFVQIKEVHVGRRFISLVFKTNLTDVVIAGGNPCYSLHDQSSCNGRPIVTATARFEIKGYDYFADSCTNTRIEDCYIVSGDDCVAGGKCNMAARLEGISGYPFPGICISNVTITMTSTDDKGITSRVTPQPCPLLLDSGPEKITDCDFPDDRLPIHAVELKHCSKIMATEIFRYNMLSDKICTSP 706
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 15348318 15360330 - Bpe010629.1 Bpe13g00947 113727

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00947 706 Gene3D - 410 459 IPR023408 -
Bpe13g00947 706 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 288 362 IPR011014 GO:0016020
Bpe13g00947 706 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 109 500 - -
Bpe13g00947 706 SUPERFAMILY Sm-like ribonucleoproteins 394 457 IPR010920 -
Bpe13g00947 706 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 1, MITOCHONDRIAL-RELATED 109 500 - -
Bpe13g00947 706 Pfam Mechanosensitive ion channel 384 500 IPR006685 GO:0016020|GO:0055085
Bpe13g00947 706 Gene3D - 282 373 - -
Bpe13g00947 706 SUPERFAMILY Pectin lyase-like 538 656 IPR011050 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00947 K22047 MSL1_2_3; mechanosensitive ion channel protein 1/2/3 - vvi:100261915 509.22
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe13g00947 Bpe-Chr13:15348318 Bpe14g00990 Bpe-Chr14:7320496 2.08E-12 wgd
Bpe13g00947 Bpe-Chr13:15348318 Bpe05g00655 Bpe-Chr5:20316390 4.92E-11 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe13g00947 . 109 496 Mechanosensitive Ion Channel Family AT4G00290 59.6 1.5e-118 423.3
Bpe14g00484 . 18 648 Mechanosensitive Ion Channel Family AT5G10490 55.8 7.7e-182 634.0
Bpe14g00484 . 19 456 Mechanosensitive Ion Channel Family AT1G58200 69.9 1.5e-177 619.8
Bpe07g00704 CCT,ECH 63 923 Mechanosensitive Ion Channel Family AT1G53470 54.0 1.4e-247 852.8
Bpe15g00798 CCT,ECH 73 896 Mechanosensitive Ion Channel Family AT1G53470 56.2 2.2e-245 845.5
Bpe07g00704 CCT,ECH 63 925 Mechanosensitive Ion Channel Family AT3G14810 52.5 3.1e-236 815.1
Bpe15g00798 CCT,ECH 73 902 Mechanosensitive Ion Channel Family AT3G14810 52.7 2.1e-229 792.3
Bpe07g00704 CCT,ECH 63 924 Mechanosensitive Ion Channel Family AT1G78610 60.3 4.1e-281 964.1
Bpe15g00798 CCT,ECH 58 901 Mechanosensitive Ion Channel Family AT1G78610 56.7 3.1e-260 894.8
Bpe15g00798 CCT,ECH 217 895 Mechanosensitive Ion Channel Family AT2G17000 58.8 1.6e-224 776.2
Bpe07g00704 CCT,ECH 221 920 Mechanosensitive Ion Channel Family AT2G17000 58.3 2.3e-223 772.3
Bpe04g00114 . 83 776 Mechanosensitive Ion Channel Family AT5G12080 57.0 1.3e-214 743.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008844 1 0 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 2 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00947 Bpe_Chr13 FPKM 2.68411 3.072233 5.795619 6.212199 4.643528 3.79621 4.886124 7.660843 7.076365 7.508132