Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00949 ATGGCTCTTGTCAATCCTATTTTGCCCTCTGTGCCTGCGATTATGTATCCTGACATTTCAGAAATAATGGCTACTGGAAGCTTAGAGATCGTGGAGCGGCCAGTTTCGTCTATTATCGAAGATATTGTTTATGTCGCAGTTGGAAAACAAGTGAAAGAGAGCAAGCTCACTTTGATTTATGCTCTGCAAAACTCAGGTGGGAAGAAGATCTGCATCATTCATGTCCATGAGCCTGCCCATATGATACCCTTAATGGGAACAAAATTTCCAGCAAACTCATTAAAGGACCAGGAAGTGAGAGCTTACCGAGAAATTGAGAGACAGAGCATGCATAAGGTCCTCGATGAGTATCTTCTTCTCTGCCGTCGCACTGGGGCTCGGGCAGAGAAACAATATACTGAATCTGATAGCATTGAGAAGGGAATTGTTGAACTCATTTCTCAGTGTGGGATTCGAAAACTTGTGATGGGAGCTGCCGCAGATAAACACTATTCAAGGAAAATGGTGGATATTAAATCCAAGAAAGCCATTTATGTTCGCTTGCAAGCTCCAGATTTTTGTCACATCCAATTTATTTGCAAGGGAAACCTTATTCACACCAGGGAAGGTAATCAACATGGAGCATGTGCACAAGCTGTATCTCCTCCATCAGTTGCACCAGCTCTATTGCCATCTGTACCACCAAGCCTGATCCCCCAAGCCTCACTCGGCCACTGGAGATCATTATCTGTCTCAGTTGCACCTATCAATGGAATGAAAAATGGTGATTATCCAAGAGCAAAATCTATGCATGGCGATTATTCAAGGGGGAACATAATTCATCCTGGTTCTCCAGATATTGACATTCTTCAAAGTCCAATGGGGTCTCCTTTCGGGGCTTTGGAAGATTATGACCGATTATTTCGGAGAAGCCCTTCTGAGCTTTCAGTTGTTTCATCAGCTTCTTGTAGTGGAGAAAATAATATTGTTTCATATTTCTCAGGACTTCTTATAGATGAGTCTCATCGATCATCCCCTCCCAGTGATGAATGCACAAATGAAAATCTTTATGAACAACTTAAACAGACAATTACAGAAGCTACAAATGCCAAGCGTGAAGCTTTTGACGAGGCCCAAAGACGTGGACATGCTGAAAAAGATGCCATTGATGCTATACGCAGGGCTAGAGTTGCAGAAAGCTTATATGCTGTGGAGTTGAGACAAAAGAAAGATCTTGAAGATGCACTAGCAGAAGAGAAGGAAAAACTCAATGACATGAAGAATCAATGTGAAAAAGTAATGGAAGAACTCAGAATTTCTCAAATGCATAGGTCAAGTCTTGAGAACCAAATTGCAGAATCTGATCAAACCGCTAAGGAGTTGGAACAAAAAATTGTTTCTGCTGTTGACCTGTTAACAAAATACAAAATCGAACGAGATGAGTTACAGAGGCTGCGGGACAGTGCTCTAAGAGAAGCACAGGAGCTTAGGAGAGCACTTGGAGAGAACTCGAGCACCCGCATGCCTCAGTTCTTTTCTGAGTTCTCATTTTCAGAAATTGAGGAGGCGACTAGATATTTTGATCCATCTATGAAGATTGGAGAAGGAGGATATGGAAGTATATATAGGGGGTTTCTGCGTCACACTGAAGTGGCTGTTAAAATACTGAACTCTCATAGCTTGCAAGGTCCCTCTGAGTTCCAGCAGGAGGTGGATGTATTGAGTAAGATGAGACATCCAAATCTCGTCACCCTCATTGGAGCTTGCCCGGAAGCCTGGATTCTAGTCTATGAATATCTTCCAAACGGAAGCCTTGAAGATAGGCTGAACTGCAAGGATAATAGTCCGCCATTATCATGGAAATGTCGAATTCGCATTGCCACAGAGTTATGCTCGGCCATTATTTTTCTTCACTCAGGTAAACCCCACAGCATAATTCATGGTGATTTGAAACCTGCAAATTTATTACTTGATTCTAATTATGGCTGCAAACTGGGAGACTTTGGAATCTGTCGCCTCGTTACTCATAACAATGGGTCAAGCAACAATGTGACTCATATTTACCAAACTGATCCTAAGGGAACTTTTGCATACATGGATCCAGAGTTTGTTTCGACAGGGGAGCTTACTGTAAAATCCGATGTGTATTCGTTTGGAATCATATTACTACGGCTACTGACAGGAAGATCAGCCTTGAGGATAGCAAAGGAAGTTCAATATGCATTGGAAAATGGAAATTTGAAAACCCTTTTAGATCCTTTAGCTGGAGACTGGCCATTTGTGCAGGCCGAGCAGTTGGCTCATTTGGCACTTAGATGTTGTGATGTAAATCGTCGAAGCAGACCAGACCTTGCGGTGGATGTTTGGAGAGTACTTGAGCCTATGAAAGCCTCATGCGGCGGCTCTTTGTCGTTTAGTTTGGGCTCTGATGAGCATTTTCAACCTCCTGGCTATTTTATTTGTCCAATCTTTCAGGAAGTTATGCAGGATCCGCAAGTGGCTGCAGATGGTCTTACATACGAAGCAGAGGCTTTGAAAGGATGGTTGGAGGGCGGGCATGACACTTCGCCAATGACAAACCTTAAGCTTGTAAACTCCACTCTCATTCCCAATCGCGCTCTGCGATCTGCAATTCAAGAATGGCTACAAAACCGTTAA 2637 42.93 MALVNPILPSVPAIMYPDISEIMATGSLEIVERPVSSIIEDIVYVAVGKQVKESKLTLIYALQNSGGKKICIIHVHEPAHMIPLMGTKFPANSLKDQEVRAYREIERQSMHKVLDEYLLLCRRTGARAEKQYTESDSIEKGIVELISQCGIRKLVMGAAADKHYSRKMVDIKSKKAIYVRLQAPDFCHIQFICKGNLIHTREGNQHGACAQAVSPPSVAPALLPSVPPSLIPQASLGHWRSLSVSVAPINGMKNGDYPRAKSMHGDYSRGNIIHPGSPDIDILQSPMGSPFGALEDYDRLFRRSPSELSVVSSASCSGENNIVSYFSGLLIDESHRSSPPSDECTNENLYEQLKQTITEATNAKREAFDEAQRRGHAEKDAIDAIRRARVAESLYAVELRQKKDLEDALAEEKEKLNDMKNQCEKVMEELRISQMHRSSLENQIAESDQTAKELEQKIVSAVDLLTKYKIERDELQRLRDSALREAQELRRALGENSSTRMPQFFSEFSFSEIEEATRYFDPSMKIGEGGYGSIYRGFLRHTEVAVKILNSHSLQGPSEFQQEVDVLSKMRHPNLVTLIGACPEAWILVYEYLPNGSLEDRLNCKDNSPPLSWKCRIRIATELCSAIIFLHSGKPHSIIHGDLKPANLLLDSNYGCKLGDFGICRLVTHNNGSSNNVTHIYQTDPKGTFAYMDPEFVSTGELTVKSDVYSFGIILLRLLTGRSALRIAKEVQYALENGNLKTLLDPLAGDWPFVQAEQLAHLALRCCDVNRRSRPDLAVDVWRVLEPMKASCGGSLSFSLGSDEHFQPPGYFICPIFQEVMQDPQVAADGLTYEAEALKGWLEGGHDTSPMTNLKLVNSTLIPNRALRSAIQEWLQNR 878
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 15382239 15387571 - Bpe010631.1 Bpe13g00949 113729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00949 878 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 807 878 IPR013083 -
Bpe13g00949 878 Coils Coil 395 433 - -
Bpe13g00949 878 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 33 38 874 - -
Bpe13g00949 878 ProSiteProfiles Protein kinase domain profile. 520 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe13g00949 878 ProSitePatterns Protein kinases ATP-binding region signature. 526 547 IPR017441 GO:0005524
Bpe13g00949 878 Coils Coil 346 370 - -
Bpe13g00949 878 SMART Ubox_2 811 874 IPR003613 GO:0004842|GO:0016567
Bpe13g00949 878 SUPERFAMILY Protein kinase-like (PK-like) 496 777 IPR011009 -
Bpe13g00949 878 PANTHER OS02G0152300 PROTEIN 38 874 - -
Bpe13g00949 878 ProSitePatterns Serine/Threonine protein kinases active-site signature. 638 650 IPR008271 GO:0004672|GO:0006468
Bpe13g00949 878 CDD STK_N 42 195 - -
Bpe13g00949 878 Pfam Protein kinase domain 523 776 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe13g00949 878 SMART serkin_6 520 788 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe13g00949 878 Gene3D Phosphorylase Kinase; domain 1 505 592 - -
Bpe13g00949 878 SUPERFAMILY RING/U-box 802 876 - -
Bpe13g00949 878 ProSiteProfiles U-box domain profile. 807 878 IPR003613 GO:0004842|GO:0016567
Bpe13g00949 878 Pfam U-box domain 809 877 IPR003613 GO:0004842|GO:0016567
Bpe13g00949 878 CDD RING-Ubox_WDSUB1_like 812 853 - -
Bpe13g00949 878 Coils Coil 437 492 - -
Bpe13g00949 878 Gene3D Transferase(Phosphotransferase) domain 1 593 794 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe13g00949 Bpe-Chr13:15382239 Bpe13g01247 Bpe-Chr13:17717128 4.19E-99 dispersed
Bpe08g00105 Bpe-Chr8:565952 Bpe13g00949 Bpe-Chr13:15382239 6.05E-177 transposed
Bpe13g00949 Bpe-Chr13:15382239 Bpe03g00276 Bpe-Chr3:3780382 0 wgd
Bpe13g00949 Bpe-Chr13:15382239 Bpe07g00994 Bpe-Chr7:15631047 1.95E-118 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63680 PF00069 Pkinase 7.30E-41 CL0016 Bpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00949 - - mnt:21395628 1048.88