Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00952 ATGGATCGGAGGGACCTTTCAGCGATGTCCGGCTCGCAATCATTTTATATGCAGAGGGGAATGACTAGTACTGGGTCTAATCCTCATCCTGGATTGCAAGGGCCGCCTCAAGTTCTTCGGTCGATAACCAGTCAAACTGCTCATATGCATTCCAATGTGGGAGGAAATACAATTGGGTCGGCATTACAGGTCGAACCGTCCCAACCAATGACAGCTCACGGTGTCAACTTGGGTGCACAATCAGTAATGCCATCGACCGAGCCGATGAAGAGGCGGAGAGGGAGACCTCGAAAGTATGGCTCTGAAGGGACCGTCTCATTGGCTCTGTCCCCCTCGGCATCAGCCAATCCGGGAATGGTATCGCCTCTCATAAAGCGGGGAAGAGGCCGACCTCCTGGGACTGGAAGGAAACAACAATTAGCCTCTCTTGGTGAATGGCTTTCTGGTTCAGCTGGGATGGGTTTCACTCCCCATATTATCTCCATTGGAGTAGGAGAAGACATTGCTGCAAAGATTATGTCGTTTTCGCAGCAGGGGCCAAGAGCGATATGCATTTTATCGGGCAATGGTGCTGTATCCACTGTGACTCTTCATCAGCCTTCAACTTCCGGTGGCACAGTTACGTATGAGGGACGATTTGAGATTGTCTGTCTGTCGGGGTCATACCTTCTCAATGATGCCATCGGATCTCGCAACCGGAACGGTGGTTTAAGCGTCTCCCTTGCCAGTCCTGATGGTCATGTGATTGGCGGCAGGGTTGGAGGAGTTCTTATTGCTGCTGGCCCCGTCCAGGTGATTTTGGGAAGCTTCGTGTGGGGTGAATCAAGAACGAAGAACAAAAGGAGGGAAGCTTCCGAAGGCGTGATAGACTCAGACCAGCAGTCGTCAGAGAATGTGGCTGGGTTGAACATTGCCGGTCTCTGCCCGGCTTCCTCCCCGATCGGAGTTTGGCCAGCTCCACAGACATTGGACATGAGAAATGCCCACATCGACATCGACTTGATGAGAGGATAA 1014 52.07 MDRRDLSAMSGSQSFYMQRGMTSTGSNPHPGLQGPPQVLRSITSQTAHMHSNVGGNTIGSALQVEPSQPMTAHGVNLGAQSVMPSTEPMKRRRGRPRKYGSEGTVSLALSPSASANPGMVSPLIKRGRGRPPGTGRKQQLASLGEWLSGSAGMGFTPHIISIGVGEDIAAKIMSFSQQGPRAICILSGNGAVSTVTLHQPSTSGGTVTYEGRFEIVCLSGSYLLNDAIGSRNRNGGLSVSLASPDGHVIGGRVGGVLIAAGPVQVILGSFVWGESRTKNKRREASEGVIDSDQQSSENVAGLNIAGLCPASSPIGVWPAPQTLDMRNAHIDIDLMRG 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 15419854 15421541 + Bpe010634.1 Bpe13g00952 113732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00952 337 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 44 295 - -
Bpe13g00952 337 SMART AT_hook_2 125 137 IPR017956 GO:0003677
Bpe13g00952 337 SMART AT_hook_2 90 102 IPR017956 GO:0003677
Bpe13g00952 337 ProSiteProfiles PPC domain profile profile. 151 292 IPR005175 -
Bpe13g00952 337 Pfam Plants and Prokaryotes Conserved (PCC) domain 157 271 IPR005175 -
Bpe13g00952 337 CDD DUF296 156 270 IPR005175 -
Bpe13g00952 337 Gene3D - 157 291 - -
Bpe13g00952 337 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 44 295 IPR039605 GO:0003680
Bpe13g00952 337 MobiDBLite consensus disorder prediction 82 139 - -
Bpe13g00952 337 SUPERFAMILY AF0104/ALDC/Ptd012-like 155 273 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00642 Bpe-Chr5:20235543 Bpe13g00952 Bpe-Chr13:15419854 2.28E-89 dispersed
Bpe07g00112 Bpe-Chr7:798720 Bpe13g00952 Bpe-Chr13:15419854 1.51E-43 dispersed
Bpe07g00145 Bpe-Chr7:1020199 Bpe13g00952 Bpe-Chr13:15419854 4.12E-68 dispersed
Bpe12g00400 Bpe-Chr12:9426340 Bpe13g00952 Bpe-Chr13:15419854 4.88E-63 dispersed
Bpe01g00230 Bpe-Chr1:1414201 Bpe13g00952 Bpe-Chr13:15419854 1.67E-52 transposed
Bpe09g00648 Bpe-Chr9:15110086 Bpe13g00952 Bpe-Chr13:15419854 1.00E-49 transposed
Bpe13g00952 Bpe-Chr13:15419854 Bpe14g00976 Bpe-Chr14:7213974 1.95E-173 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00952 - - rcu:8261862 437.187