Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00960 ATGGAAGACGATTGGGATCTTCACGCCGTCGTCAGAGGCTGTAACGCCACAGCCACAACGACCGTTTCTTCTTCTGCTTCCTTCTCTGCTTCCATTGCTGCGTTGACTTTTCAAGCTTTTGCATCAGATTCTCCTGGCTCTGGCTTTTCCACTTTCAGTAGAGAGAAAACAGGTCAGTTTTTCTCCGTTCAAGATCCGTTTGAAGGAAGAAACAACGACGAGGAGTTGCACGAGCTTTACAAGCCTTTCTTCCCCAAATCTCCGGTGACGGAGCAGCCTCGGCCGATTTATTCTCCGGCGACGGCGGTCTCTCAGTTTTCTTTTCCGACAGCGTCGAAAGCTCAAATCCACCAAAAGCAGAGCCATGAAGGATCTGCAACCGCCCCTCGGACCAAACGAAGAAAGAACCAAATGAAGAACGTTTGTCAAGTACCAGCAGAGAGTCTTTCTTCAGATATATGGGCATGGCGAAAATATGGGCAAAAACCCATTAAAGGCTCTCCATATCCAAGGGGGTATTACAGATGTAGCAGCTCAAAGGGGTGTTTGGCCCGGAAACAAGTGGAGCGGAATAGATCCGACCCGGGAATGTTCGTCGTCACCTACACGGCCGAACATAACCACCCTGCTCCGACGCACCGCAACTCACTCGCCGGTTCTACGCGTCAAAAGACATCGACCGCCGTATCCGTATCATCATCTGACCAGAAGAAAAGCGAATCTGAAGTACCCGATTTCTCCTCCTCACCATCGTTGGAAGACGGCGGTGCACCCCAGAGTACTACGGCGGAAAGCAAGGAAGAGAAGAAGGATTTAGCTGGAGACGAAGAAGACGAATTTGGGGTGTCGAAGATGGTCTTGAATGACGATTTCTTTGTGGGGTTTGAGGAGCTCGACAGTCCGGCTACCGAAGACAGCTTTTACGACAACTTTCCGGCCAACCTTAATGTTTCTTGGATGGTCACGTAG 969 50.36 MEDDWDLHAVVRGCNATATTTVSSSASFSASIAALTFQAFASDSPGSGFSTFSREKTGQFFSVQDPFEGRNNDEELHELYKPFFPKSPVTEQPRPIYSPATAVSQFSFPTASKAQIHQKQSHEGSATAPRTKRRKNQMKNVCQVPAESLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNRSDPGMFVVTYTAEHNHPAPTHRNSLAGSTRQKTSTAVSVSSSDQKKSESEVPDFSSSPSLEDGGAPQSTTAESKEEKKDLAGDEEDEFGVSKMVLNDDFFVGFEELDSPATEDSFYDNFPANLNVSWMVT 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 15480354 15481533 + Bpe010642.1 Bpe13g00960 113740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00960 322 ProSiteProfiles WRKY domain profile. 145 211 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bpe13g00960 322 MobiDBLite consensus disorder prediction 111 125 - -
Bpe13g00960 322 SUPERFAMILY WRKY DNA-binding domain 148 211 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bpe13g00960 322 Pfam WRKY DNA -binding domain 152 209 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bpe13g00960 322 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 1 311 IPR044810 GO:0003700
Bpe13g00960 322 MobiDBLite consensus disorder prediction 205 281 - -
Bpe13g00960 322 SMART WRKY_cls 150 210 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bpe13g00960 322 Gene3D WRKY domain 134 204 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bpe13g00960 322 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 1 311 - -
Bpe13g00960 322 MobiDBLite consensus disorder prediction 263 281 - -
Bpe13g00960 322 MobiDBLite consensus disorder prediction 208 262 - -
Bpe13g00960 322 MobiDBLite consensus disorder prediction 111 142 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe13g00960 Bpe14g00971 CCT
Bpe13g00960 Bpe14g00971 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01046 Bpe-Chr2:11410084 Bpe13g00960 Bpe-Chr13:15480354 9.48E-44 dispersed
Bpe11g01029 Bpe-Chr11:7645356 Bpe13g00960 Bpe-Chr13:15480354 1.09E-44 dispersed
Bpe13g00960 Bpe-Chr13:15480354 Bpe15g00672 Bpe-Chr15:17387760 1.42E-31 dispersed
Bpe13g00960 Bpe-Chr13:15480354 Bpe14g00971 Bpe-Chr14:7174468 3.55E-167 wgd
Bpe13g00960 Bpe-Chr13:15480354 Bpe05g00659 Bpe-Chr5:20336426 1.34E-49 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22334 PF03106 WRKY 6.70E-25 CL0274 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00960 K13425 - csv:101217082 351.673