Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00984 ATGGAATTTGATCGCATTGAAAGCTTGCCATCGTCGGATGTGATGGACGAGGGCGAGATCCATCAACATCGTCGACAGTTTTCTTCTAATTCCAAGCCTCAAACCGTCAACAGCCCTCATTTTCACCTTACCACCACCAATGTTCATGAGCTTCTTGAATGCCCCGTCTGTACGAATTCTATGTACCCTCCAATTCATCAGTGCCACAATGGGCACACGCTTTGTTCAACCTGTAAAACAAGGGTGCACAATCGATGCCCGACGTGTAGACAAGAGCTGGGCGACATAAGGTGTTTAGCATTGGAAAAAGTAGCCGAATCGCTTGAATTGCCTTGCAAATACTGTTCGTTGGGATGCCCAGAGATATTTCCCTACTATAACAAGCTTAAACATGAATCTGTGTGTAATTTTAGACCATACAATTGTCCTTACGCCGGTTCTGACTGTGCCGTCGTTGGAGATATTCCCTTCCTTGTTTCTCATCTCAGAGACGATCACAAGGTTGACATGCATTCGGGATGCACTTTCAATCATCGCTATGTCAAGTCCAATCCTCGAGAAGTAGAAAACGCAACATGGATGTTAACTGTATTCCACTGCTTTGGTCAGTACTTTTGTCTCCATTTCGAAGCATTCCAACTGGGTATGGCTCCTGCTTATATGGCGTTTCTTCGATTCATGGGCAGCGAAGCAGAAGCCAGAAACTACAGCTATAGCCTGGAAGTTGGGGGAAGTGGAAGAAAACTCATTTGGGAGGGGAGCCCCAGAAGCATTAGGGACAGTCACGAGAAGGTGAGGGACAGCCACGACGGCCTGATTATTCAGCGTAACATAGCGCTTTTCTTCTCCGGCGGGGAGAGGAAAGAGCTGAAGCTCCGAGTGACCGGCCGGATATGGAAAGAACAGCCCAACTCGGATGGTGGACCCTGCATACCTATCCTATTTAGCCAAGAATGA 957 47.44 MEFDRIESLPSSDVMDEGEIHQHRRQFSSNSKPQTVNSPHFHLTTTNVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYCSLGCPEIFPYYNKLKHESVCNFRPYNCPYAGSDCAVVGDIPFLVSHLRDDHKVDMHSGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPAYMAFLRFMGSEAEARNYSYSLEVGGSGRKLIWEGSPRSIRDSHEKVRDSHDGLIIQRNIALFFSGGERKELKLRVTGRIWKEQPNSDGGPCIPILFSQE 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 15613363 15616296 - Bpe010666.1 Bpe13g00984 113764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00984 318 MobiDBLite consensus disorder prediction 1 40 - -
Bpe13g00984 318 CDD RING-HC_SIAHs 52 90 - -
Bpe13g00984 318 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 1 306 - -
Bpe13g00984 318 SUPERFAMILY TRAF domain-like 107 299 - -
Bpe13g00984 318 ProSiteProfiles Zinc finger RING-type profile. 54 90 IPR001841 -
Bpe13g00984 318 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 47 96 IPR013083 -
Bpe13g00984 318 CDD Sina 168 296 - -
Bpe13g00984 318 MobiDBLite consensus disorder prediction 1 26 - -
Bpe13g00984 318 Pfam Seven in absentia protein family 96 295 IPR018121 GO:0005737|GO:0006511|GO:0007275
Bpe13g00984 318 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 160 IPR013083 -
Bpe13g00984 318 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 306 - -
Bpe13g00984 318 SUPERFAMILY RING/U-box 38 93 - -
Bpe13g00984 318 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 161 295 IPR008974 GO:0005515
Bpe13g00984 318 ProSiteProfiles Zinc finger SIAH-type profile. 107 167 IPR013010 GO:0008270
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe11g01230 Bpe-Chr11:9190637 Bpe13g00984 Bpe-Chr13:15613363 1.34E-21 dispersed
Bpe13g00984 Bpe-Chr13:15613363 Bpe15g00979 Bpe-Chr15:19385499 3.07E-165 dispersed
Bpe13g00984 Bpe-Chr13:15613363 Bpe14g00945 Bpe-Chr14:7028123 0 wgd
Bpe13g00984 Bpe-Chr13:15613363 Bpe03g00232 Bpe-Chr3:3103483 0 wgd
Bpe13g00984 Bpe-Chr13:15613363 Bpe07g01014 Bpe-Chr7:15768477 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00984 K04506 - pvy:116121280 579.711