Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00998 GCCTCAATGGCTCTCCCTCCCGTAGAGTGTGCGTACGTTACAGAAGATTCTCTTCGCGAGTGGAAGTCTGGAAACTTGAGCTTCAAGGTTCCTCACCCTGTTCCCATGCTCCGGTTCCTCTATGAGCTTTGTTGGACAATGGTTCGGGGTGAATTACCCTTTCCGGTGTGTAAAGCTGCATTGGACACGGTTGAATTCTTGGAAAAAGTGTCTATGGAAGAGTTGGGGTCGAGTTTGGCTGATATTGTGACCCAAATGGCTCAAGATCTTACAATGCTGGGAGAGTTTCGTCTTCGCCTTATAAAATTGCTATGTGTTAGTATTGTTAACTTTCTTTTTTATCAGGCGAAGTGGCTGGTTGAATCAACACTGGTTCCATTAAGGGTTTTTCAGGAGCGATGTGAGGAAGAATTCTTGTGGGAGGCTGAAATGATAAAAATAAGGGCTCAAGACTTGAAGAATAAAGAGGTCAGGGTTAATACACGCCTGCTTTATCAGCAAACAAAGTTTAACCTTCTACGAGAAGAGAGTGAGGGCTATGCCAAGCTGCTTACCCTTCTTTGTCGGGACATTGAAGCTTCAAGTCAGAGTGTATCAGATTCAACAATAGGCATTATTAAGTCGTTAATTGGACATTTTGATTTGGACCCAAATCGTGTTTTTGACATTGTTTTGGAGTGTTTTGAGCTTCAGCCCGATAATGGAGTTTTCTTAGAGCTTATTCCCATATTTCCAAAGTCTCATGCAGCACAAATTCTCGGTTTCAAATTTCAATATTATCAGCGGATGGAAGTGAGTTCTCATGTGTCGTTCGGGCTTTATAAGCTTACAGCCTTGTTGGTCAGAGAAGAATTTATTAATCTTGATAGCATATATGCACATTTACTTCCCAAGGATGATGAGGCATTTGAGCATTATAATGCATTTTCTTCCAAGCGGCTTGATGAGGCTAACAAAATTGGGAAAATAAATCTTGCTGCTACTGGTAAGGACCTAATGGAAGACGAAAAGCAAGGAGACATCACAGTTGATCTTTTTGCTGCTTTAGACATGGAAAATGATGCAGTAAATGAAAGGTCTTCGGAGCTGGAAAATAATCAAACGTTGGGCTTGCTGACAGGCTTTCTTTCTGTTGGTGACTGGTACCATGCATATATACTCTTTGGTAGACTCTTACCTATTAATCCGGTTGAGCATCGGGCAATTTGTAACAGCTTGTTTAGGCTCATTGAAGAATCAATCTCTTCAGCATATTCAATTGTTCGTAAGAGACATTCACAAAACTTGGGATCTTCCTCTGGAGCGAGCATCGACGCAATGGGCTTGGTAACTTCAGCTTATCCTTTGTTTATTGATCTTCCAGAAGAACTTTTTCAGATGCTTGGTGTTGCTGGCCCTTATCTTTTCCGTGATGCAATTTTGCTGCAGAAGGTTTGTCGAGTATTGAAAGGTTACTATGTATCTGCAATGGAGCTTGTAAATAGTGGAGGAGATTTTATTCGTGAGCCAACCATTGGTAAGAATAAGGCTCCTCGTTTGCATCTTAAGGAAGCCAGGTCAAGGATAGAGGAAGCTTTAGGAATAAGCCTGCTACCTTCTTTACAGTTGTTACCTGCAAATCCAGCTGTTGGGCAAGAAATATGGGAAGTAATGAGTCTCCTTCCTTATGAGGTGCGGTACCGTTTATATGGAGAGTGGGAGAAAGATGATGAAAGAATTCCCATAGTTTTAGCTACAAGGCAAACAGCCAAGTTGGACACTAGAAGGATTTTGAAACGTCTTGCAAAGGAGAACTTAAAACAATTGGGTAGGATGATAGCAAAGTTAGCTCATGCCAATCCGATGACTGTTCTCCGTACCATTGTCCATCAGATCGAGGCATACAGAGATATGATTACTCCGGTGGTAGATGCATTTAAATATCTTACCCAGTTAGAATATGATATTTTGGAATATGTTGTGATTGAGCGGCTGGCACAAAGTGGGCGTGACAAGTTAAAAGACGATGGCCTTAATTTGTCAGACTGGCTTCAATCTTTGGCATCATTTTGGGGACACTTCTTTTACTGTTATAGTATCATCATAACTTACGTGATTCCTTTGTTTATTCCTGATATTATTTACATGGTTCATAGGTGTAAGAAGTACCCATCTATGGAATTGAGAGGTCTTTTTCAGTATCTCGTTAACCAATTGAAAAAAGGACAAGGAATAGAACTTGTTCTCCTCCAGGAGCTCATTCAACAAATGGCAAATGTCCAGTACACTGAAAACCTCACTGAGGAACAGCTAGATGCAATGGCAGGAAGTGAGACTCTTCGTTATCAGGCAACTTCCTTTGGAGTGGCTCGCAACAACAAGGCATTGATCAAATCCAGTAATAGACTAAGGGACTCATTACTTCCTAAGGACGAATCAAAGTTGGCAATTCCTCTTCTGTTACTTATTGCTCAACATCGTTCTGTTGTTGTTATAAGTGCAACTGCCCCTTACATTAAGATGGTCAGTGAACAATTTGATAGATGCCATGGTACGCTACTTCAGTATGTAGATTTCTTAACTACTGTGGTGACGCCTGCATCAGCTTATGCCCAGTTGATTCCCTCATTGAATGATCTTGTCCACTTGTATCACCTTGATCCGGAGGTTGCATTCTTGATATACCGCCCTGTTATAAGGCTATTTAAGTGTCAGGATCAATCTGATGTCTTCTGGCCTTTGGATGACAAAATTTTAAATATTGTGGAAATGAACTCTGAATCTGATCGGACACAAGACTCTGCTAACGTGGTTTTAGATCTTGGCCCTCCACGAGAACCTATAAAGTGGTCAGATCTTCTAGATACTGTTAAATCGATGTTGCCAACTAAAGCATGGAACAGCCTATCTCCAGATCTCTATGCTACATTTTGGGGGCTGACACTTTATGATCTTTATGTTCCTAGAAGTCGTTATGAATCTGAAGTTTCGAAGCAGCATGCTGCTCTCAAAGCTTTGGAAGAGCTCTCTGATAATTCAAGTTCGGCAATCACAAAAAGGAAAAAAGATAAGGAAAGAATACAAGAATCTCTTGATCGCTTGACTAGTGAGCTCCGTAAGCATGAAGAAAATGTTGCATCAGTTCGTCGGCGACTTGCTCGTGAGAAGGATAAATGGCTGAGTTCATGTCCCGATACCTTAAAAATTAACATGGAGTTCCTTCAACGTTGTATTTTTCCTCGTTGCACATTTAGTATGCCTGATGCTGTTTATTGCGCCTTGTTCGTACACACTCTACATTCTCTCGGAACACCTTTCTTTAACACAGTTAATCATATTGATGTGTTGATATGTAAAACCTTGCAACCTATGATCTGTTGCTGTACTGAATATGAGGCAGGCAGACTTGGAAGATTTTTATATGAGACACTCAAGATTGCTTATTTCTGGAAGAGTGATGAATCCATTTATGAGCGAGAGTGTGGAAATATGCCTGGTTTTGCTGTGTATTATCGATATCCGAACAGCCAGAGAGTCACTTATGGCCAATTCATTAAGGTACATTGGAAATGGAGTCAAAGAATCACAAGGCTACTGATTCAGTGTTTAGAATCGACTGAGTACATGGAAATTCGAAATGCTCTAATAATGCTGACCAAGATTTCTGGTGTTTTTCCTGTTACTCGAAAGAGTGGGATCAACCTTGAAAAACGGGTAGCCAAGATCAAAAGTGATGAAAGAGAAGATCTGAAGGTGTTGGCAACCGGCGTAGCTGCAGCTTTAGCATCTAGAAAATCTTCATGGGTTACTGATGAAGAATTTGGCATGGGATATCTTGAGCTAAAAGCTGCACCACCCGTGACTTCAAAATCTTCGGCTAACAGTTTAACATCTATACAAAATAGTTCTGTTCATAATGTTTCTCAAAGTGAACCTGGTGGGGGGAAAACTGCAGCTATAGGAAGCCACCATTCAGATTCTGGGAATCTGCTGAAAGATCAAAGGTCAAGATCTGGTGATGGGAAATCAGAACGAACAGATGGTGTTGTGAAATCTGATGCAGGGTTTGGAAAAGTAAGAAGTAATTTGTCGGTGAATGGTTCTGATTCTCACTTGTCGATGCCTTCTGGGGCAGTACAAGTTGCAACATCTAGAGTAATTGAAAGTCAAAAACCAGCTGATGAGTTGAATAGAACAGTAGATGACAATGTTGTAAAAGTGGCTTCAAAGAACTTAATGGAATCTGAGTTGAGGGCTGTGGGAAAACGATCACAGCCTGCTGGTTCACTCAATAAGGCACCAAAACAAGATACTGCAAAAGATGATGGGAGATCTGGTAAAGCTTCTGGAAAACTTTCTGGCTCTTCCACCAGTGATAGGGAGCTTCTTAGTCAAGCATCAGATGTTAGGCAGGGTGGGGCTTCTAATATTCCCCCTTCAATGACAGGAAATGGTAACTCAATAACTACTTCAGCTAGAGGTTCCTCATCATCTACAAGAGCATATGATAGTCACGGTCCCGAACCTAAGTTAGAGGCTGGAGCTACCAAGTCGTTTGATTTAAGGGCTACTTCGGCTAAGGATGACGGCATTGATGTTCCTGATTTGCCAAGGGTCTCGTCTCGACTTGCTCATTCTCCCCGACATGATAGTTCTTCTACTGCTTCCAAATCTAGTGACAAAGTGCAGAAAAGGTCTAGTCCCGCTGAAGAGCCAGACAGGCAAAGTAAACGTCGAAAAGGAGAGAATGAAGCTAAGGAAACCGAAGGTGAAGTTCGGGGTTCTGACTTAGAGAGATTCGTTGATGCTGACAAATCAGGAATTGATGAGCACAATGCTTATAAAGCTACAGATAAAAATGTGGATAGACCGAAGGACAAGGGAAATGAAAGGTATGATAGAGATTACAGGGATAGGTTGGATCGCTCTGACAAGTCTCGGGCAGATGATACATTAGTGGAAAAAGTACGGGATAGGTCAATGGAAAGATATGGACGAGAGCGCTCAGTTGAGCGACTTCAAGAGAGAGCCTCTGATAGGTCTTTTGAAAGATATCTTGAGAAACCAAAGATCGATAGAATAAAAGATGAGAGAACGAAAGTGCGATATAGTGAAGGATCTGCTGACAAATCTCTCATGGATGAGCGGTTTCATGGGCAAAGCTTGCCTCCTCCACCACCCATACCACCTCATCTGGTCCCCCAGTCAGTTAGCACCAGTAGAAGAGATGAAGATGGTGATAGGAGGTTTGGGATTACAAGACACACTCAAAGACTTTCTCCAAGACACGAAGAGAAGGAAAGACGGCGATCAGAGGAGAGTTTAGTTCTACAGGATGATGGGAAGCGCAGAAGAGAAGAAGAGTTTCGAGAGAAGAAAAGAGAAGAACGAGAAGGGATACTTACAAAGGTGGAGGAGAGAGAAAGGGAGAGGGATAGAGAGAAGGCCAATCTTTTGAAGGAGGATATGGATGCAACTGCTGTGTCGAAAAGACGAAAACTGAAAAGAGAGCATCATCCTTCAGGGGAAGCTGGAGAGTATTCACCTGTGCCTGCAGCTCCCCCACCACTTGGTGTTGGAGTTTCTCAGTCGTATGATACTAGAGAGAGGGGAGATCGGAAAGGAGTCATGATGAGCCGTGGGGTATACTTGGATGAAACTGGTTCAAGGATTCATTCTAAAGAAGTAGCTAGCAAGATGACCCTTCGGGACTCTGACCAGATGCACGACCGAGAATGGGATGATGAGAAAAGGCAGAGGGTGGAGCAAAAGCGAAGACATCGAAAGTAA 5769 42.19 ASMALPPVECAYVTEDSLREWKSGNLSFKVPHPVPMLRFLYELCWTMVRGELPFPVCKAALDTVEFLEKVSMEELGSSLADIVTQMAQDLTMLGEFRLRLIKLLCVSIVNFLFYQAKWLVESTLVPLRVFQERCEEEFLWEAEMIKIRAQDLKNKEVRVNTRLLYQQTKFNLLREESEGYAKLLTLLCRDIEASSQSVSDSTIGIIKSLIGHFDLDPNRVFDIVLECFELQPDNGVFLELIPIFPKSHAAQILGFKFQYYQRMEVSSHVSFGLYKLTALLVREEFINLDSIYAHLLPKDDEAFEHYNAFSSKRLDEANKIGKINLAATGKDLMEDEKQGDITVDLFAALDMENDAVNERSSELENNQTLGLLTGFLSVGDWYHAYILFGRLLPINPVEHRAICNSLFRLIEESISSAYSIVRKRHSQNLGSSSGASIDAMGLVTSAYPLFIDLPEELFQMLGVAGPYLFRDAILLQKVCRVLKGYYVSAMELVNSGGDFIREPTIGKNKAPRLHLKEARSRIEEALGISLLPSLQLLPANPAVGQEIWEVMSLLPYEVRYRLYGEWEKDDERIPIVLATRQTAKLDTRRILKRLAKENLKQLGRMIAKLAHANPMTVLRTIVHQIEAYRDMITPVVDAFKYLTQLEYDILEYVVIERLAQSGRDKLKDDGLNLSDWLQSLASFWGHFFYCYSIIITYVIPLFIPDIIYMVHRCKKYPSMELRGLFQYLVNQLKKGQGIELVLLQELIQQMANVQYTENLTEEQLDAMAGSETLRYQATSFGVARNNKALIKSSNRLRDSLLPKDESKLAIPLLLLIAQHRSVVVISATAPYIKMVSEQFDRCHGTLLQYVDFLTTVVTPASAYAQLIPSLNDLVHLYHLDPEVAFLIYRPVIRLFKCQDQSDVFWPLDDKILNIVEMNSESDRTQDSANVVLDLGPPREPIKWSDLLDTVKSMLPTKAWNSLSPDLYATFWGLTLYDLYVPRSRYESEVSKQHAALKALEELSDNSSSAITKRKKDKERIQESLDRLTSELRKHEENVASVRRRLAREKDKWLSSCPDTLKINMEFLQRCIFPRCTFSMPDAVYCALFVHTLHSLGTPFFNTVNHIDVLICKTLQPMICCCTEYEAGRLGRFLYETLKIAYFWKSDESIYERECGNMPGFAVYYRYPNSQRVTYGQFIKVHWKWSQRITRLLIQCLESTEYMEIRNALIMLTKISGVFPVTRKSGINLEKRVAKIKSDEREDLKVLATGVAAALASRKSSWVTDEEFGMGYLELKAAPPVTSKSSANSLTSIQNSSVHNVSQSEPGGGKTAAIGSHHSDSGNLLKDQRSRSGDGKSERTDGVVKSDAGFGKVRSNLSVNGSDSHLSMPSGAVQVATSRVIESQKPADELNRTVDDNVVKVASKNLMESELRAVGKRSQPAGSLNKAPKQDTAKDDGRSGKASGKLSGSSTSDRELLSQASDVRQGGASNIPPSMTGNGNSITTSARGSSSSTRAYDSHGPEPKLEAGATKSFDLRATSAKDDGIDVPDLPRVSSRLAHSPRHDSSSTASKSSDKVQKRSSPAEEPDRQSKRRKGENEAKETEGEVRGSDLERFVDADKSGIDEHNAYKATDKNVDRPKDKGNERYDRDYRDRLDRSDKSRADDTLVEKVRDRSMERYGRERSVERLQERASDRSFERYLEKPKIDRIKDERTKVRYSEGSADKSLMDERFHGQSLPPPPPIPPHLVPQSVSTSRRDEDGDRRFGITRHTQRLSPRHEEKERRRSEESLVLQDDGKRRREEEFREKKREEREGILTKVEERERERDREKANLLKEDMDATAVSKRRKLKREHHPSGEAGEYSPVPAAPPPLGVGVSQSYDTRERGDRKGVMMSRGVYLDETGSRIHSKEVASKMTLRDSDQMHDREWDDEKRQRVEQKRRHRK 1922
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 15726131 15758691 + Bpe010681.1 Bpe13g00998 113778

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00998 1922 Coils Coil 982 1002 - -
Bpe13g00998 1922 MobiDBLite consensus disorder prediction 1283 1346 - -
Bpe13g00998 1922 Coils Coil 1783 1803 - -
Bpe13g00998 1922 MobiDBLite consensus disorder prediction 1539 1555 - -
Bpe13g00998 1922 MobiDBLite consensus disorder prediction 1731 1824 - -
Bpe13g00998 1922 Pfam THO complex subunit 2 N-terminus 68 428 IPR032302 -
Bpe13g00998 1922 Pfam THO complex subunit 2 N-terminus 459 604 IPR032302 -
Bpe13g00998 1922 MobiDBLite consensus disorder prediction 1442 1496 - -
Bpe13g00998 1922 Coils Coil 346 366 - -
Bpe13g00998 1922 MobiDBLite consensus disorder prediction 1283 1308 - -
Bpe13g00998 1922 Pfam Transcription- and export-related complex subunit 606 681 IPR021726 -
Bpe13g00998 1922 PANTHER THO COMPLEX SUBUNIT 2 11 1829 - -
Bpe13g00998 1922 Coils Coil 1010 1051 - -
Bpe13g00998 1922 MobiDBLite consensus disorder prediction 1409 1922 - -
Bpe13g00998 1922 Pfam Transcription factor/nuclear export subunit protein 2 959 1253 IPR021418 -
Bpe13g00998 1922 MobiDBLite consensus disorder prediction 1321 1344 - -
Bpe13g00998 1922 MobiDBLite consensus disorder prediction 1556 1709 - -
Bpe13g00998 1922 MobiDBLite consensus disorder prediction 1880 1914 - -
Bpe13g00998 1922 PANTHER THO2 PROTEIN 11 1829 IPR040007 GO:0000347|GO:0006397|GO:0006406
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00998 K12879 THOC2; THO complex subunit 2 - qsu:111987545 2738.37
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g529 . Blo16g00765 . Bda11g00196 Bpe13g00998 . . . . . . . . . . . Cpe01g01856 . . . . . . . . . . . . . . . . . . . Csa05g01969 . . . . . Bda11g00196 . . . Bma06g01140 . Cmo04g02231 Cmo15g00928 Cma04g02138 Cma15g00890 Car04g02075 Car15g00836 Cpe13g00426 . Bhi12g00962 . . . . . Lcy10g1597 Cla01g00652 Cam01g0681 Cec01g0674 Cco01g0701 Clacu01g0669 Cmu01g0642 Cre09g1863 Lsi09g00705 . Chy09g00805 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005299 1 1 2 1 1 1 2 1 1 1 1 1 3 1 1 3 1 2 2 1 2 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00998 Bpe_Chr13 FPKM 0.602226 0.569405 0.0 0.0 1.87348 1.636772 1.863416 0.915453 0.857442 1.494058