Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g01010 ATGCATAAACTCTTCTTAAACCTGAATGTTTCTCACCCAGTTCGTCGGTTTCTTTATCCAACTTTGACGAACCCTAGATTGCTCTCACTTGTTTCATATTTTCACAGTTCTTCCAGTATTCTTGCATCAGATTCAAAGCTAGGCTCTGCATTTGACGAGGAGAATGAGACTAAGTCTTCAAAACACTTATCCGGAAAAACCCTATTGATCGAGAAGCAGTGTGAGCAAATTGAAGCTACAAATGCCCAAGAAATGACGGTTAGAGTGTCACATCCTTGGCCAGAATGGGTTGCTTTAATGGAGTTATTGTTCAAGGAAGGTTACTTTGAAGGAGGGAGAAATCCTTTTCGAAGTTCTGATTTGGGTGCTAAGGAGTTGAATTGTATTCGAACTGCTTGCCTTAACTATGCCCGGGTTCAATATGATCTTATAAGGAATTTTTCGAGAAAGGATATTCAAATAATTGCTGGATGTGGCTGCCCAAGCATGGACAGGAAGGTTGTTAACTCTGGAAAACGACTTAGGGCGCACGTTGGCATCGATGAAGGAAGTGTATGTGGTTCTTGCAACTTGAGGGGAGAATGCGAAAGAGCATACGTGAAGGCAGAAGCAGGAGAAGGTCCCCGAACTATGGATGTCATGCGTGTGTTGCTAGTGTATGGTCTTGATAACATTTCTAGTATGGTGGAGAACAAGGCATGTCTAGACAAAACTGTAAAGGAGTCAGTGAGAAGGCTTTTGAAAGAACTGGTGAATGGGTCTCATCTTTCAAAGTTAACAAATCCTACCTGCTCTTCATGGATGGTAGATCAATCGGAGCCACAAAAAGATGTCCAAATGAAGGAAGGCGACTGGCTTTGCCCCAATTGTAACTTCCTGAATTTTTCCAAAAATGTGAAGTGCCTGCGATGTGATGGCATATTCCTAGAACGACTGAGGAAATTAAACAAGGACTTGGATCATCTTCCATTGAAGAAGGGGGATTGGATATGTGACAAATGCCGCTTCTTGAATTTTGCAAAGAACTCGCGATGTTTGCAGTGCGAAGAAAAGCCAAGGAACCGTCAATTAAATCCAGGGGAGTGGGAATGCGAATCGTGTAACTACATTAATTTCAGAAAAAATATGGTATGCTTGAGGTGCGATCATAGACCGCCAAAAGGATCAAAAGATTTAAATATTAAGTCTTCTACTCTACTCAATGAGAAAAAAGCAGTCCATAGTTTGTTCAAACCAAGATTTGGTAGAATAGAGAGTGATTCTGTTGGTGACATATGTAAGGGTCAAGCTAGGAAGGTTGGAATCAGAAGTGCTAATTCCTGGCGGTCTATTGATAATGATGCTGAAGGTCCTTCAATTTTGCAAAGCGGGACATATGGTCTGGCTGATTTCCCAATTCTTGGTGGCGAGAGTGATTTGTCCCGTTCTGCAGAAAGAAGAGAAAAATGGAAAGAAGAGATTCAGAGGAAGAGTACTGAGGGCAGACAAGCATGGAAGAAGGAAAAGGAACTTGGGTCTTCATCTTCCAATATTCAAGACGAATCGGAGTGTACTGAACTCACCGATGATGAAGAGATGGCTGGGTGGTTTGCTGCTAACCTGAAGAAGGAGATCGAAAGTTCATGA 1626 42.07 MHKLFLNLNVSHPVRRFLYPTLTNPRLLSLVSYFHSSSSILASDSKLGSAFDEENETKSSKHLSGKTLLIEKQCEQIEATNAQEMTVRVSHPWPEWVALMELLFKEGYFEGGRNPFRSSDLGAKELNCIRTACLNYARVQYDLIRNFSRKDIQIIAGCGCPSMDRKVVNSGKRLRAHVGIDEGSVCGSCNLRGECERAYVKAEAGEGPRTMDVMRVLLVYGLDNISSMVENKACLDKTVKESVRRLLKELVNGSHLSKLTNPTCSSWMVDQSEPQKDVQMKEGDWLCPNCNFLNFSKNVKCLRCDGIFLERLRKLNKDLDHLPLKKGDWICDKCRFLNFAKNSRCLQCEEKPRNRQLNPGEWECESCNYINFRKNMVCLRCDHRPPKGSKDLNIKSSTLLNEKKAVHSLFKPRFGRIESDSVGDICKGQARKVGIRSANSWRSIDNDAEGPSILQSGTYGLADFPILGGESDLSRSAERREKWKEEIQRKSTEGRQAWKKEKELGSSSSNIQDESECTELTDDEEMAGWFAANLKKEIESS 541
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 15855795 15858828 - Bpe010692.1 Bpe13g01010 113790

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g01010 541 PANTHER ZINC FINGER PROTEIN 302 534 - -
Bpe13g01010 541 PANTHER ZINC FINGER PROTEIN 1 255 - -
Bpe13g01010 541 PANTHER ZINC FINGER PROTEIN 273 304 - -
Bpe13g01010 541 Pfam Zn-finger in Ran binding protein and others 360 382 IPR001876 -
Bpe13g01010 541 Pfam Zn-finger in Ran binding protein and others 325 349 IPR001876 -
Bpe13g01010 541 Pfam Zn-finger in Ran binding protein and others 281 305 IPR001876 -
Bpe13g01010 541 PANTHER RAN BP2/NZF ZINC FINGER-LIKE SUPERFAMILY PROTEIN 302 534 - -
Bpe13g01010 541 SMART zf_4 283 307 IPR001876 -
Bpe13g01010 541 SMART zf_4 360 384 IPR001876 -
Bpe13g01010 541 SMART zf_4 327 351 IPR001876 -
Bpe13g01010 541 ProSitePatterns Zinc finger RanBP2-type signature. 329 348 IPR001876 -
Bpe13g01010 541 ProSitePatterns Zinc finger RanBP2-type signature. 362 381 IPR001876 -
Bpe13g01010 541 ProSiteProfiles Zinc finger RanBP2 type profile. 281 304 IPR001876 -
Bpe13g01010 541 MobiDBLite consensus disorder prediction 484 502 - -
Bpe13g01010 541 Coils Coil 473 493 - -
Bpe13g01010 541 ProSitePatterns Zinc finger RanBP2-type signature. 285 304 IPR001876 -
Bpe13g01010 541 SUPERFAMILY Ran binding protein zinc finger-like 275 305 IPR036443 -
Bpe13g01010 541 ProSiteProfiles Zinc finger RanBP2 type profile. 358 387 IPR001876 -
Bpe13g01010 541 ProSiteProfiles Zinc finger RanBP2 type profile. 325 354 IPR001876 -
Bpe13g01010 541 PANTHER RAN BP2/NZF ZINC FINGER-LIKE SUPERFAMILY PROTEIN 1 255 - -
Bpe13g01010 541 PANTHER RAN BP2/NZF ZINC FINGER-LIKE SUPERFAMILY PROTEIN 273 304 - -
Bpe13g01010 541 SUPERFAMILY Ran binding protein zinc finger-like 353 386 IPR036443 -
Bpe13g01010 541 MobiDBLite consensus disorder prediction 484 523 - -
Bpe13g01010 541 Gene3D - 272 306 - -
Bpe13g01010 541 Gene3D - 353 388 - -
Bpe13g01010 541 Gene3D - 318 352 - -
Bpe13g01010 541 SUPERFAMILY Ran binding protein zinc finger-like 322 350 IPR036443 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g01010 - - - minc:123216042 526.554
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g01050 Bpe-Chr7:15980429 Bpe13g01010 Bpe-Chr13:15855795 1.52E-32 dispersed
Bpe09g00593 Bpe-Chr9:14665518 Bpe13g01010 Bpe-Chr13:15855795 7.11E-58 dispersed
Bpe13g01065 Bpe-Chr13:16259304 Bpe13g01010 Bpe-Chr13:15855795 3.34E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g489 . . . Bda11g00183 Bpe13g01010 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0370 . . Csa05g01992 . . . . . Bda11g00183 . . . . . . Cmo15g01024 . Cma15g00977 . Car15g00923 Cpe13g00350 Cpe04g01365 Bhi12g00936 . . . Hepe02g2626 . . Cla01g00635 . . Cco01g0681 Clacu01g0651 Cmu01g0625 Cre09g1879 Lsi09g00684 . Chy09g00823 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011612 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g01010 Bpe_Chr13 FPKM 4.739234 4.878639 0.0 0.308513 11.734914 14.944904 12.349365 0.0 0.0 0.0