Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g01031 ATGAATGTTCCAGGAGCATGGCAGATGCCTCAGGGGGGCATTGAAGATGGTGAAGATCCTAAACTGGCTGCTGTGAGAGAACTCAGAGAGGAAACTGGCATAGTATCTGCAGAAATTATTGCCGAGGTACCGGAATGGTTGACTTATGACTTCCCTCCTGCCGTAAAGACAAAAGTCAATCGCGTCTGGGGCGGACAATGGCATGGTCAGGCACAGAAATGGTATCTTATGAGATTGACGAACGACGATAGTGAGGTAAACTTGACAAACGGAGAAGCAGATACAGAATTTGCAGAGTGGAAATGGGCGAACCCGGAAGAAGTAATCGAACAGGCTGTAGACTACAAGAGGCCGACATACGAGCAAGTGATGAGGACGTTCAAGGCTTACTTAGACGAAATGGGAATGGCCGCGAAATGTAAATCGTCAAAATGGTGA 438 47.49 MNVPGAWQMPQGGIEDGEDPKLAAVRELREETGIVSAEIIAEVPEWLTYDFPPAVKTKVNRVWGGQWHGQAQKWYLMRLTNDDSEVNLTNGEADTEFAEWKWANPEEVIEQAVDYKRPTYEQVMRTFKAYLDEMGMAAKCKSSKW 145
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 16002457 16003796 - Bpe010712.1 Bpe13g01031 113811

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g01031 145 SUPERFAMILY Nudix 3 129 IPR015797 -
Bpe13g01031 145 PANTHER BNACNNG74470D PROTEIN 1 145 - -
Bpe13g01031 145 Pfam NUDIX domain 4 122 IPR000086 -
Bpe13g01031 145 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 1 131 - -
Bpe13g01031 145 PANTHER UDP/ADP-SUGAR PYROPHOSPHATASE 1 145 - -
Bpe13g01031 145 ProSiteProfiles Nudix hydrolase domain profile. 1 125 IPR000086 -
Bpe13g01031 145 PRINTS NUDIX hydrolase family signature 7 21 IPR020476 -
Bpe13g01031 145 PRINTS NUDIX hydrolase family signature 21 36 IPR020476 -
Bpe13g01031 145 CDD Ap4A_hydrolase_plant_like 1 127 IPR022927 -
Bpe13g01031 145 ProSitePatterns Nudix box signature. 12 33 IPR020084 GO:0016787
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g01031 - - - cit:102608969 280.411
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g428 . . . . Bpe13g01031 . . . . Cmo18g00957 . Cma18g00956 . Car18g00873 . Cpe09g00366 . . . . . . . . Cla07g00640 Cam07g0663 Cec07g0715 Cco07g0718 Clacu07g0661 Cmu07g0684 Cre07g1032 . . Cone6ag0396 Cone9ag0422 Lsi04g01163 Csa05g02704 Chy10g01230 Cme10g01537 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000763 3 3 1 2 1 3 4 3 3 3 3 3 4 3 3 3 3 4 3 3 3 2 5 3 4 3 3 5 5 2 93
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g01031 Bpe_Chr13 FPKM 35.594566 39.25156 13.111983 12.963628 15.446484 13.902063 14.597305 19.842638 20.343628 23.883705