Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g01048 ATGCATAAGGAAACATCCGCCGCCTCCCATGGCGGTCACACTACCAGTAGCATAACCGACATATCGTCTTCTTTCCTTAAGTCCTGCCTTCAACCGAGTGAGGACTTTTATGGTCCTCTATATTCACCTATCTTCCCGGATGAACAATCTCTTCCTAGCTCTCTCTCTTTTACTCCGTATGGAATCTCAGAATCGAATTCAGCATCAGCTTCAGCCTCGGCAGTTTTAGGCAAACACCTTTACTTCACCCGCGCTGTCCAAGAGCACCAAGAAATTGTCAATCGGCATAGTCTCTGCCTAACTCATCTTCGCGAAGCCACCGAAGAAGCAAAGACTCTTCGCCACGAGAACACCAGACTCCGCTGTGTTAACAGCGAACTCAACAAGCATCTAAGCGTCATGATGCACGACAAGGTCCAGCCGCAAACCGTTTCTTGTGACTACTCGATGTCATATGACATTGTCAATGGATTTCGTGGACTTCATGTTGGCGGTAAGGGGGGAAGTAGTTCTACGTGCGATGATGTTCTAGATGAGAGCCCTACGAGTGTGATGGAGAATGGAAGAATCGAGAACGTAGAGGTCGAGAGGTTCTCGCTGCCAAAGAGTATTTCCGTAAGATCGAATGGATACTTGAACTTGAAGATGGCTCAAACTAGTGCCAACAGTGGCGAGCGGATTCGCACCTTTACGAGACCAAGAACGGCGAGTCCAACCAAGCAAAAGGTCTACGTGCCGGCTGGGAAGAAAGTGGACGAGCCCCTTGAACTGGAGGTGTACAACCAAGGAATGTTCAAGACTGAACTCTGCAACAAGTGGCAGGAAACCGGTGCTTGCTCGTACGGAGATCACTGCCAGTTTGCACATGGCATTGAGGAGCTCCGCCCTGTAATCCGCCACCCCCGCTACAAGACGGAGGTCTGCAGGATGGTTCTCTCTGGTGTTGTCTGTCCTTATGGTCATCGATGCCACTTCCGCCATGCACTCACTGATCAGGAGAGGCTTATGGGTGCCCTCAATCCCCCCTCGACGATTAAGCTGGAAAGGTGA 1050 50.48 MHKETSAASHGGHTTSSITDISSSFLKSCLQPSEDFYGPLYSPIFPDEQSLPSSLSFTPYGISESNSASASASAVLGKHLYFTRAVQEHQEIVNRHSLCLTHLREATEEAKTLRHENTRLRCVNSELNKHLSVMMHDKVQPQTVSCDYSMSYDIVNGFRGLHVGGKGGSSSTCDDVLDESPTSVMENGRIENVEVERFSLPKSISVRSNGYLNLKMAQTSANSGERIRTFTRPRTASPTKQKVYVPAGKKVDEPLELEVYNQGMFKTELCNKWQETGACSYGDHCQFAHGIEELRPVIRHPRYKTEVCRMVLSGVVCPYGHRCHFRHALTDQERLMGALNPPSTIKLER 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 16143718 16145595 - Bpe010727.1 Bpe13g01048 113828

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g01048 349 ProSiteProfiles Zinc finger C3H1-type profile. 302 330 IPR000571 GO:0046872
Bpe13g01048 349 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 265 290 IPR000571 GO:0046872
Bpe13g01048 349 PANTHER CCCH ZINC FINGER/TIS11-RELATED 58 340 IPR045877 GO:0003729
Bpe13g01048 349 SMART c3hfinal6 302 329 IPR000571 GO:0046872
Bpe13g01048 349 SMART c3hfinal6 264 291 IPR000571 GO:0046872
Bpe13g01048 349 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 15 58 340 - -
Bpe13g01048 349 SUPERFAMILY CCCH zinc finger 261 296 IPR036855 GO:0046872
Bpe13g01048 349 ProSiteProfiles Zinc finger C3H1-type profile. 264 292 IPR000571 GO:0046872
Bpe13g01048 349 Coils Coil 103 123 - -
Bpe13g01048 349 Gene3D - 298 334 - -
Bpe13g01048 349 Gene3D - 258 297 - -
Bpe13g01048 349 SUPERFAMILY CCCH zinc finger 298 332 IPR036855 GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g01048 K18753 ZFP36L; butyrate response factor - csv:101203274 433.335
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00404 Bpe-Chr5:18440988 Bpe13g01048 Bpe-Chr13:16143718 1.21E-10 transposed
Bpe11g00015 Bpe-Chr11:105212 Bpe13g01048 Bpe-Chr13:16143718 6.43E-78 transposed
Bpe13g01048 Bpe-Chr13:16143718 Bpe02g02008 Bpe-Chr2:21753868 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g371 . . . . Bpe13g01048 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0797 Cone19ag0802 . . . Csa05g02054 . . . . . . . . . Bma06g01092 . . Cmo15g00971 . Cma15g00931 . Car15g00875 Cpe13g00388 . Bhi12g00856 . . . Hepe02g2686 . Lcy10g1463 Cla01g00581 Cam01g0608 Cec01g0599 Cco01g0622 Clacu01g0600 Cmu01g0573 Cre09g1932 Lsi09g00631 Csa05g01229 Chy09g00883 Cme09g01416
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008528 1 2 0 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 2 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22341 PF00642 zf-CCCH 1.40E-11 CL0537 Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g01048 Bpe_Chr13 FPKM 0.420786 0.937753 1.887316 2.084128 8.234919 5.851906 5.716111 0.0 0.0 0.08081