Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g01056 CTCTTCCTCCCTCTACTGTCAGTTGCAGAAATGGTGCAATCAAAGAAGTTCAGAGGAGTCAGGCAGAGACATTGGGGCTCATGGGTATCAGAAATTCGCCATCCGTTGCTGAAAAGAAGGGTTTGGCTTGGAACTTTTGAGACCGCAGAAGAAGCAGCCAGAGCTTACGATCAAGCAGCCATTTTAATGAGTGGAAGAAACGCAAAGACGAATTTTCCAGTCCCTCAAACTCCCACAGGCGATTCTGAGAAAAACAAACTGTCGCCATTATCGCCCAAGAGCTTATCAGAAATTCTTCACCAAAAGCTGAGAAAATGCAGCAAAACACCTTCTCCTTCAATGACTTGTTTGAGGCTAGACAATGAAAATTCCCATATCGGAGTTTGGCAAAAGCGGGCCGGGCAAAGTTCAAACTCCAATTGGGTAATGACTGTTGAGCTTGGAAAGAAGGAATCTGAACAGAATATTTCGTCTTCTTCATCATCATCGTCTTCGGATCAGCTTCCGCCATTGGAGGTAAACCCTGAGCTTCCCAGAGAGATAAATGAAGAAGAAAAACTTGCACTGCAAATGATAGAGGAACTGCTTATAGGAAACAGTCCAAACCCTACATTTGAGTGTCAAGAAGATTCACGCCCTAAATCATTTTACCAGTAA 657 43.84 LFLPLLSVAEMVQSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFPVPQTPTGDSEKNKLSPLSPKSLSEILHQKLRKCSKTPSPSMTCLRLDNENSHIGVWQKRAGQSSNSNWVMTVELGKKESEQNISSSSSSSSSDQLPPLEVNPELPREINEEEKLALQMIEELLIGNSPNPTFECQEDSRPKSFYQ 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 16205097 16205888 + Bpe010733.1 Bpe13g01056 113836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g01056 218 CDD AP2 15 74 IPR001471 GO:0003700|GO:0006355
Bpe13g01056 218 Gene3D AP2/ERF domain 15 74 IPR036955 GO:0003700|GO:0006355
Bpe13g01056 218 ProSiteProfiles AP2/ERF domain profile. 16 73 IPR001471 GO:0003700|GO:0006355
Bpe13g01056 218 Pfam AP2 domain 16 64 IPR001471 GO:0003700|GO:0006355
Bpe13g01056 218 MobiDBLite consensus disorder prediction 149 184 - -
Bpe13g01056 218 PRINTS Ethylene responsive element binding protein signature 39 55 IPR001471 GO:0003700|GO:0006355
Bpe13g01056 218 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700|GO:0006355
Bpe13g01056 218 MobiDBLite consensus disorder prediction 69 89 - -
Bpe13g01056 218 SMART rav1_2 16 79 IPR001471 GO:0003700|GO:0006355
Bpe13g01056 218 MobiDBLite consensus disorder prediction 201 218 - -
Bpe13g01056 218 MobiDBLite consensus disorder prediction 198 218 - -
Bpe13g01056 218 PANTHER AP2-EREBP TRANSCRIPTION FACTOR 11 207 - -
Bpe13g01056 218 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 11 207 - -
Bpe13g01056 218 MobiDBLite consensus disorder prediction 149 170 - -
Bpe13g01056 218 SUPERFAMILY DNA-binding domain 16 74 IPR016177 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe02g02027 Bpe13g01056 CCT
Bpe01g00775 Bpe13g01056 CCT
Bpe02g02027 Bpe13g01056 ECH
Bpe01g00775 Bpe13g01056 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00563 Bpe-Chr2:3632254 Bpe13g01056 Bpe-Chr13:16205097 1.10E-79 dispersed
Bpe04g00054 Bpe-Chr4:470637 Bpe13g01056 Bpe-Chr13:16205097 6.97E-82 dispersed
Bpe06g00683 Bpe-Chr6:17434406 Bpe13g01056 Bpe-Chr13:16205097 1.73E-32 dispersed
Bpe09g00436 Bpe-Chr9:11173869 Bpe13g01056 Bpe-Chr13:16205097 7.87E-29 dispersed
Bpe13g01056 Bpe-Chr13:16205097 Bpe12g00058 Bpe-Chr12:436846 2.56E-22 dispersed
Bpe01g00775 Bpe-Chr1:7912872 Bpe13g01056 Bpe-Chr13:16205097 1.88E-85 transposed
Bpe13g01056 Bpe-Chr13:16205097 Bpe02g02027 Bpe-Chr2:21876454 1.06E-116 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22344 PF00847 AP2 8.70E-13 CL0081 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g01056 - - qsu:112002896 290.041