Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g01156 ATGACGAGCTGCGTCAATGTTGCACCCGAGCAACTTTGCTACATACCCTGCAATTTTTGCCATATTGTTCTTGCGGTGAATGTTCCATGCAGCTATATGTTTGACATTGTCACCGTCCTATGTGGTCACTGCAAAAATCTCTGGTCTGTGAACATGGCATCTGCATTTCAGTCACGTTCATGGCAAGATCCCCAGGCTCAAATTTACTCTTACAATCGACCCGACCATTATCGAATCCACTCAAGGTCCTCGTCCAAATACAACAACAAGATCATGACACTTTGTCTTCAGACCAAAAACTCGAATTCAGCTGAGAGGCTTGCGAGTCGAACTCCAGAGAAGAGGCAACGGGTTCCTTCTGCTTATAATCAGTTCATAAAGGAAGAAATTCAAAGGATCAAGGCCAATAAGCCAGATATTTCCCACAGGGAAGCATTTAGCACTGCTGCAAAAAATGTGAGTGGTAATTAA 471 43.74 MTSCVNVAPEQLCYIPCNFCHIVLAVNVPCSYMFDIVTVLCGHCKNLWSVNMASAFQSRSWQDPQAQIYSYNRPDHYRIHSRSSSKYNNKIMTLCLQTKNSNSAERLASRTPEKRQRVPSAYNQFIKEEIQRIKANKPDISHREAFSTAAKNVSGN 156
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 17012747 17014644 + Bpe010832.1 Bpe13g01156 113936

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g01156 156 PANTHER AXIAL REGULATOR YABBY 5 1 153 - -
Bpe13g01156 156 SUPERFAMILY HMG-box 106 149 IPR036910 -
Bpe13g01156 156 Pfam YABBY protein 8 152 IPR006780 GO:0007275
Bpe13g01156 156 PANTHER PROTEIN YABBY 6-RELATED 1 153 IPR006780 GO:0007275
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g01156 K25796 YAB; plant-specific transcription factor YABBY family protein - mnt:21395565 217.624
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00747 Bpe-Chr1:6729826 Bpe13g01156 Bpe-Chr13:17012747 4.54E-68 dispersed
Bpe08g00230 Bpe-Chr8:1302089 Bpe13g01156 Bpe-Chr13:17012747 1.90E-44 dispersed
Bpe13g01156 Bpe-Chr13:17012747 Bpe05g01079 Bpe-Chr5:23283427 3.29E-36 dispersed
Bpe13g01156 Bpe-Chr13:17012747 Bpe02g02129 Bpe-Chr2:22651365 1.08E-80 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe13g01366 . 2 163 C2C2-YABBY Transcription Factor Family AT1G69180 56.1 2.6e-44 175.3
Bpe05g01079 . 64 218 C2C2-YABBY Transcription Factor Family AT2G45190 64.8 2.0e-51 198.7
Bpe05g00592 BCT,CCT 63 218 C2C2-YABBY Transcription Factor Family AT2G45190 53.6 2.8e-40 161.8
Bpe11g00259 CCT 62 212 C2C2-YABBY Transcription Factor Family AT2G45190 56.2 4.7e-40 161.0
Bpe07g00159 BCT,CCT 62 217 C2C2-YABBY Transcription Factor Family AT2G45190 50.9 2.2e-37 152.1
Bpe01g00275 . 1 183 C2C2-YABBY Transcription Factor Family AT1G08465 58.5 8.9e-56 213.4
Bpe05g00592 BCT,CCT 20 192 C2C2-YABBY Transcription Factor Family AT1G08465 56.1 2.1e-44 175.6
Bpe11g00259 CCT 19 189 C2C2-YABBY Transcription Factor Family AT1G08465 56.3 8.7e-43 170.2
Bpe07g00159 BCT,CCT 19 189 C2C2-YABBY Transcription Factor Family AT1G08465 55.0 1.1e-42 169.9
Bpe01g00747 BCT 9 172 C2C2-YABBY Transcription Factor Family AT1G08465 56.5 1.5e-42 169.5
Bpe02g02129 BCT 5 176 C2C2-YABBY Transcription Factor Family AT1G08465 52.5 9.6e-42 166.8
Bpe08g00230 . 1 146 C2C2-YABBY Transcription Factor Family AT1G08465 61.8 1.2e-41 166.4
Bpe05g01079 . 22 195 C2C2-YABBY Transcription Factor Family AT1G08465 53.4 9.9e-39 156.8
Bpe05g01079 . 32 216 C2C2-YABBY Transcription Factor Family AT4G00180 54.5 3.5e-48 188.3
Bpe11g00259 CCT 29 211 C2C2-YABBY Transcription Factor Family AT4G00180 51.9 2.5e-46 182.2
Bpe05g00592 BCT,CCT 30 216 C2C2-YABBY Transcription Factor Family AT4G00180 51.2 3.1e-44 175.3
Bpe07g00159 BCT,CCT 29 209 C2C2-YABBY Transcription Factor Family AT4G00180 51.7 2.9e-42 168.7
Bpe11g01781 . 3 186 C2C2-YABBY Transcription Factor Family AT1G23420 60.0 2.3e-41 166.0
Bpe02g02129 BCT 7 170 C2C2-YABBY Transcription Factor Family AT2G26580 74.4 3.2e-65 244.6
Bpe01g00747 BCT 7 171 C2C2-YABBY Transcription Factor Family AT2G26580 67.9 4.2e-57 217.6
Bpe01g00275 . 1 164 C2C2-YABBY Transcription Factor Family AT2G26580 61.0 2.7e-48 188.3
Bpe13g01156 . 7 152 C2C2-YABBY Transcription Factor Family AT2G26580 65.8 1.1e-44 176.4
Bpe05g00592 BCT,CCT 20 190 C2C2-YABBY Transcription Factor Family AT2G26580 52.9 1.6e-43 172.6
Bpe07g00159 BCT,CCT 19 189 C2C2-YABBY Transcription Factor Family AT2G26580 50.9 3.2e-41 164.9
Bpe11g00259 CCT 19 177 C2C2-YABBY Transcription Factor Family AT2G26580 55.3 4.2e-41 164.5
Bpe05g01079 . 22 187 C2C2-YABBY Transcription Factor Family AT2G26580 53.0 3.4e-38 154.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001272 2 2 3 3 3 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 7 3 1 76
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22354 PF04690 YABBY 2.80E-55 CL0114 Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g01156 Bpe_Chr13 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.330141 0.125408 0.099675