Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g01237 ATGCCGGTGCATCTAACTCCTAATTCGATTTACGCCATCATCGCCGGCGATGTCAATTCGAAGCCGGTCGTTCAGGTTCTGGATATTAAGGCCATCGGTAACGCGCAGGAGAGATACCGGCTCTTAATTTCCGACGCTGTTTCGTCGCAGCACGCTATGCTCGCGACTCAGCTTAATCACTCGGTCAAGAATGGTCTAGTAAAGATAGGATCTGTCGTCCAATTGATTGAGTACATTTGTAGCCCCGTCCAGAATCGCAAGATTATTATGGTGCTTACCATGGAAACTATAATACTTGATTGTGAGATCATTGGAAATCCAAAATCATTAACAGCTGGCGATTCCACTTCTCAGATGTTAACTAATAACAATGTAAAGCAAAGTGTACAGTTTAGTAATGGTCAATTGAGTTCTCAAAGATCTGAGCATAATATGCACAACTTTCAGCCAACTGTTCAACCTCCATATCAACCACCTCCAAATTATAGAAACAGTGGTCCTATGATGAAGAATGAAGCACCGGCTCGCATCATTCCTATTTCAGCATTAAATCCTTATCAGGGCCGCTGGGCTGTAAAGGCAAGAGTTACAGCAAAAGGTGATCTCCGTCGCTACAATAATGCTCGAGGAGATGGTAAGGTATTTTCATTTGACCTTCTGGACTCTGAAGGAGGAGAAATTAGAGTGACCTGTTTCAATGCTGTTGTTGATCGTTTCTATGAGCTTATAGAGGTTGGCAAGGTTTATTTAGTTTCAAAAGGCAATTTGAAGCCCGCCCAGAAAAACTTTAATCATTTGAAGAATGAATGGGAGATATTTTTGGAGGCAACTTCTACTGTGGATCTTTGCCCAGATGAAGATGGCTCTATACCGAGGCAACAATTTTCTTTCAGACCTATCAGTGAAATTGAGAATGTTGAAAACAATACTATACTTGATGTGATTGGTATTGTGATATCTGTGAACCCTTCGGTTCCTATATTAAGAAAGAATGGTATGGAAACACAGAGAAGAATTCTTAATTTAAAAGATGCATCTAGCAGGATTGTTGACCTAACCTTGTGGGGAGAATTTTGCAATAGAGAAGGTCAACGACTTCAAGATTTGGTTGATTCTGAGGTTTTTCCAGTTCTAGCTGTCAAAGCTGGGAAGGTAAATGACTTCACTGGTAAATCTATAGGAACTATTTCTGCAACACAGCTCTTTATAAACCCTGATTTTCCAGAGGCTCATGTCTTAAGAGATTGGTATGAACAAGGAGGTAAGAATGCATCTTCTTTGTCTATTTCTAAAGAAATTATGCCTGGAGGATCTAAGAATGAGATGAGGAAAACTGTAACTCAAATAAAAGATGAAGGTCTTGGACGATCTGATAAGCCTGACTGGATCACTGTGAAGGCAACCATATCTTTTATTAAAACTGACTCATTCTGTTATACTGCCTGCCCATTAATGATTGGAGATCGACAATGCAGCAAGAAAGTAACGAGGTTAGGAGACGCAAGATGGCAATGCGATAGGTGCAATCAAGACTTTGAGGAGTGTGATTACAGATATCTTCTTCAGGCTCAAATTCAAGATCATTCAGGATTGACTTGGGTGACTGCTTTTCAGGAAGCTGGGGAAGAAATATTAGGCGTGTCTGCTAAGGAGTTATACTTGTTGAAGTATGAAGAACAGGATGACACCAAGTTTGGAGAAATAATCCAGAGCAGAATTTTCAGCCAATTCATGTTTAGGCTTAAAATTAAAGAGGAGATGTATGGCGATGAACAGAGGATGAAAATTACAGTTGTGAAGGCCGATAGAGTGGACTACCAATCAGAGAGCAAATACATGCTGGATTTTATTTCAAAAATTTCTAGGTGA 1869 40.13 MPVHLTPNSIYAIIAGDVNSKPVVQVLDIKAIGNAQERYRLLISDAVSSQHAMLATQLNHSVKNGLVKIGSVVQLIEYICSPVQNRKIIMVLTMETIILDCEIIGNPKSLTAGDSTSQMLTNNNVKQSVQFSNGQLSSQRSEHNMHNFQPTVQPPYQPPPNYRNSGPMMKNEAPARIIPISALNPYQGRWAVKARVTAKGDLRRYNNARGDGKVFSFDLLDSEGGEIRVTCFNAVVDRFYELIEVGKVYLVSKGNLKPAQKNFNHLKNEWEIFLEATSTVDLCPDEDGSIPRQQFSFRPISEIENVENNTILDVIGIVISVNPSVPILRKNGMETQRRILNLKDASSRIVDLTLWGEFCNREGQRLQDLVDSEVFPVLAVKAGKVNDFTGKSIGTISATQLFINPDFPEAHVLRDWYEQGGKNASSLSISKEIMPGGSKNEMRKTVTQIKDEGLGRSDKPDWITVKATISFIKTDSFCYTACPLMIGDRQCSKKVTRLGDARWQCDRCNQDFEECDYRYLLQAQIQDHSGLTWVTAFQEAGEEILGVSAKELYLLKYEEQDDTKFGEIIQSRIFSQFMFRLKIKEEMYGDEQRMKITVVKADRVDYQSESKYMLDFISKISR 622
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 17632853 17635379 + Bpe010903.4 Bpe13g01237 114017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g01237 622 Gene3D - 176 286 IPR012340 -
Bpe13g01237 622 SUPERFAMILY Nucleic acid-binding proteins 294 424 IPR012340 -
Bpe13g01237 622 MobiDBLite consensus disorder prediction 132 151 - -
Bpe13g01237 622 CDD RPA1_DBD_B 311 418 - -
Bpe13g01237 622 Pfam Replication protein A OB domain 300 404 IPR031657 -
Bpe13g01237 622 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT A 2 617 - -
Bpe13g01237 622 PANTHER REPLICATION FACTOR A 1, RFA1 2 617 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Bpe13g01237 622 Gene3D - 289 429 IPR012340 -
Bpe13g01237 622 SUPERFAMILY Nucleic acid-binding proteins 176 289 IPR012340 -
Bpe13g01237 622 Gene3D - 3 111 IPR012340 -
Bpe13g01237 622 CDD RPA1N 10 104 IPR007199 GO:0003677|GO:0005634|GO:0006260
Bpe13g01237 622 Pfam Replication factor-A protein 1, N-terminal domain 5 97 IPR007199 GO:0003677|GO:0005634|GO:0006260
Bpe13g01237 622 SUPERFAMILY Nucleic acid-binding proteins 1 106 IPR012340 -
Bpe13g01237 622 Pfam OB-fold nucleic acid binding domain 191 272 IPR004365 GO:0003676
Bpe13g01237 622 CDD RPA1_DBD_C 448 619 IPR013955 -
Bpe13g01237 622 Gene3D - 430 620 IPR012340 -
Bpe13g01237 622 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 6 619 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Bpe13g01237 622 SUPERFAMILY Nucleic acid-binding proteins 443 619 IPR012340 -
Bpe13g01237 622 MobiDBLite consensus disorder prediction 132 157 - -
Bpe13g01237 622 CDD RPA1_DBD_A 179 282 - -
Bpe13g01237 622 Pfam Replication factor-A C terminal domain 462 613 IPR013955 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00251 Bpe-Chr7:1791913 Bpe13g01237 Bpe-Chr13:17632853 0 dispersed
Bpe07g00755 Bpe-Chr7:14079346 Bpe13g01237 Bpe-Chr13:17632853 5.09E-97 dispersed
Bpe13g01237 Bpe-Chr13:17632853 Bpe12g00524 Bpe-Chr12:11107744 1.05E-98 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g01237 K07466 - zju:107409151 1014.22