Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g01240 ATGGATGGAGCGGCAGGTTACAACCCCCGAACTGTCGAAGAGGTTTTCAGAGACTTTAGGGGTCGTCGAGCCGGCATGATCAAAGCTCTCACAGCAGACGTCGAAGAATTTTATCAACAGTGCGATCCTGAGAAGGAAAACCTTTGCCTTTATGGACTTCCTAATGAGGAGTGGGAAGTTAATTTGCCAGCTGAAGAAGTGCCCCCCGAGCTGCCGGAGCCTGCATTAGGTATTAACTTTGCTAGAGATGGGATGGAAGAGAAAGACTGGTTATCCCTGGTTGCTGTTCACGGTGATGCTTGGTTACTTTCAGTGGCTTTCTATTTTGGTTCCAGATTTGGTTTTGATAAAGCTGACAGGAAACGTCTGTTCACTATGATAAATGACGTCCCCACAATATTTGAGATAGTGACCGGAAGTGTGAAGAAACAAGGAAAGGAGAAGTCATCAATTTCAAATCATAGCAGTAATAAATCTAAGTCAGACTCAAAAGGGGTAAGTGGAATACATAATCTGATCAGAAGAGGCTCTGAATCTAGCGATGTACAGAAAGAGATGTTGAAAGAAGAGGACGAAGAATTTGAAGAAGAAGAAGAGGAAGACCATGGGGATACCTTATGTGGGGCCTGCAAAGAGAGTTACACATCGGACGAGTTCTGGATTTGCTGTGACATTTGTGAGAAGTGGTTTCATGGCAAGTGCGTGAAGATAACTCCGGCAAGAGCCGAACACATCAAACAATATAAGTGCCCTTCGTGCAGCAATAAGAGAGGTCGACAC 780 44.74 MDGAAGYNPRTVEEVFRDFRGRRAGMIKALTADVEEFYQQCDPEKENLCLYGLPNEEWEVNLPAEEVPPELPEPALGINFARDGMEEKDWLSLVAVHGDAWLLSVAFYFGSRFGFDKADRKRLFTMINDVPTIFEIVTGSVKKQGKEKSSISNHSSNKSKSDSKGVSGIHNLIRRGSESSDVQKEMLKEEDEEFEEEEEEDHGDTLCGACKESYTSDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRGRH 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 17643801 17652548 - Bpe025281 Bpe13g01240 114020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g01240 260 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 196 255 IPR013083 -
Bpe13g01240 260 Pfam Alfin 11 138 IPR021998 GO:0006355|GO:0042393
Bpe13g01240 260 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 4 259 - -
Bpe13g01240 260 SUPERFAMILY FYVE/PHD zinc finger 196 258 IPR011011 -
Bpe13g01240 260 Pfam PHD-finger 207 256 IPR019787 -
Bpe13g01240 260 ProSiteProfiles Zinc finger PHD-type profile. 204 256 IPR019787 -
Bpe13g01240 260 PANTHER CPG BINDING PROTEIN 4 259 IPR045104 GO:0006355|GO:0042393
Bpe13g01240 260 CDD PHD_AL_plant 206 256 IPR044104 -
Bpe13g01240 260 Coils Coil 180 200 - -
Bpe13g01240 260 MobiDBLite consensus disorder prediction 145 200 - -
Bpe13g01240 260 ProSitePatterns Zinc finger PHD-type signature. 207 253 IPR019786 -
Bpe13g01240 260 MobiDBLite consensus disorder prediction 145 166 - -
Bpe13g01240 260 SMART PHD_3 206 254 IPR001965 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00775 Bpe-Chr4:4982058 Bpe13g01240 Bpe-Chr13:17643801 1.18E-89 dispersed
Bpe13g01240 Bpe-Chr13:17643801 Bpe14g00276 Bpe-Chr14:2783384 1.81E-125 dispersed
Bpe15g01161 Bpe-Chr15:20480741 Bpe13g01240 Bpe-Chr13:17643801 2.59E-30 dispersed
Bpe01g00604 Bpe-Chr1:3979265 Bpe13g01240 Bpe-Chr13:17643801 2.51E-48 wgd
Bpe13g01240 Bpe-Chr13:17643801 Bpe02g02185 Bpe-Chr2:23047068 1.39E-138 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22365 PF12165 Alfin 2.70E-68 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g01240 - - rcu:8272513 421.394