Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bpe13g01240 | ATGGATGGAGCGGCAGGTTACAACCCCCGAACTGTCGAAGAGGTTTTCAGAGACTTTAGGGGTCGTCGAGCCGGCATGATCAAAGCTCTCACAGCAGACGTCGAAGAATTTTATCAACAGTGCGATCCTGAGAAGGAAAACCTTTGCCTTTATGGACTTCCTAATGAGGAGTGGGAAGTTAATTTGCCAGCTGAAGAAGTGCCCCCCGAGCTGCCGGAGCCTGCATTAGGTATTAACTTTGCTAGAGATGGGATGGAAGAGAAAGACTGGTTATCCCTGGTTGCTGTTCACGGTGATGCTTGGTTACTTTCAGTGGCTTTCTATTTTGGTTCCAGATTTGGTTTTGATAAAGCTGACAGGAAACGTCTGTTCACTATGATAAATGACGTCCCCACAATATTTGAGATAGTGACCGGAAGTGTGAAGAAACAAGGAAAGGAGAAGTCATCAATTTCAAATCATAGCAGTAATAAATCTAAGTCAGACTCAAAAGGGGTAAGTGGAATACATAATCTGATCAGAAGAGGCTCTGAATCTAGCGATGTACAGAAAGAGATGTTGAAAGAAGAGGACGAAGAATTTGAAGAAGAAGAAGAGGAAGACCATGGGGATACCTTATGTGGGGCCTGCAAAGAGAGTTACACATCGGACGAGTTCTGGATTTGCTGTGACATTTGTGAGAAGTGGTTTCATGGCAAGTGCGTGAAGATAACTCCGGCAAGAGCCGAACACATCAAACAATATAAGTGCCCTTCGTGCAGCAATAAGAGAGGTCGACAC | 780 | 44.74 | MDGAAGYNPRTVEEVFRDFRGRRAGMIKALTADVEEFYQQCDPEKENLCLYGLPNEEWEVNLPAEEVPPELPEPALGINFARDGMEEKDWLSLVAVHGDAWLLSVAFYFGSRFGFDKADRKRLFTMINDVPTIFEIVTGSVKKQGKEKSSISNHSSNKSKSDSKGVSGIHNLIRRGSESSDVQKEMLKEEDEEFEEEEEEDHGDTLCGACKESYTSDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRGRH | 260 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 17643801 | 17652548 | - | Bpe025281 | Bpe13g01240 | 114020 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bpe13g01240 | 260 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 196 | 255 | IPR013083 | - | |
Bpe13g01240 | 260 | Pfam | Alfin | 11 | 138 | IPR021998 | GO:0006355|GO:0042393 | |
Bpe13g01240 | 260 | PANTHER | PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 | 4 | 259 | - | - | |
Bpe13g01240 | 260 | SUPERFAMILY | FYVE/PHD zinc finger | 196 | 258 | IPR011011 | - | |
Bpe13g01240 | 260 | Pfam | PHD-finger | 207 | 256 | IPR019787 | - | |
Bpe13g01240 | 260 | ProSiteProfiles | Zinc finger PHD-type profile. | 204 | 256 | IPR019787 | - | |
Bpe13g01240 | 260 | PANTHER | CPG BINDING PROTEIN | 4 | 259 | IPR045104 | GO:0006355|GO:0042393 | |
Bpe13g01240 | 260 | CDD | PHD_AL_plant | 206 | 256 | IPR044104 | - | |
Bpe13g01240 | 260 | Coils | Coil | 180 | 200 | - | - | |
Bpe13g01240 | 260 | MobiDBLite | consensus disorder prediction | 145 | 200 | - | - | |
Bpe13g01240 | 260 | ProSitePatterns | Zinc finger PHD-type signature. | 207 | 253 | IPR019786 | - | |
Bpe13g01240 | 260 | MobiDBLite | consensus disorder prediction | 145 | 166 | - | - | |
Bpe13g01240 | 260 | SMART | PHD_3 | 206 | 254 | IPR001965 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bpe04g00775 | Bpe-Chr4:4982058 | Bpe13g01240 | Bpe-Chr13:17643801 | 1.18E-89 | dispersed | |
Bpe13g01240 | Bpe-Chr13:17643801 | Bpe14g00276 | Bpe-Chr14:2783384 | 1.81E-125 | dispersed | |
Bpe15g01161 | Bpe-Chr15:20480741 | Bpe13g01240 | Bpe-Chr13:17643801 | 2.59E-30 | dispersed | |
Bpe01g00604 | Bpe-Chr1:3979265 | Bpe13g01240 | Bpe-Chr13:17643801 | 2.51E-48 | wgd | |
Bpe13g01240 | Bpe-Chr13:17643801 | Bpe02g02185 | Bpe-Chr2:23047068 | 1.39E-138 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
22365 | PF12165 | Alfin | 2.70E-68 | No_clan | Bpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bpe13g01240 | - | - | rcu:8272513 | 421.394 |