Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g01246 ATGTATTTCTGCAGAACTAATAGTGGTACATTCATGGACGGTGATCTTCTCATCAATCGGGAGGGAGTTCAAATTGTCTGTCAGGTTCAGAAAGAAGCTAAAAATTCATGTCAACTCAACCCCTCAGACAGCCAGTGGAGTTTGGAAGACCTGGATACAGTTAAAGTCATCGGAAAAGGAAACGGCGGAGTTGTTCAGTTGGTGAAGCACAAAGCCACCGGCCAGTTTTTCGCATTGAAGGTTATTCAAATGAAGATCGAGGAGAGTTATCGGAAACAGATAGCGAGTGAACTGAAAATTAATCAGTCAGCTCGAAGCCCATATGTGGTGGTCTGTTATCAGTCTTTCTACTACAATGGAGCCATTTCAATTATCTTAGAGTACATGGATGGAGGGAGTCTAGCAGATTTTCTGAAACAAGTTAAGTCGATTCCTGAGGAATATCTTGCTGCAATATGTAAACAGGTGCTGAGGGGACTTTTGTACCTTCACCATGAAATGCACGTAATTCACAGGGACTTGAAGCCTTCAAATCTGCTAATAAATCACAAAGGAGAAGTCAAGATTAGTGATTTTGGTGTGAGCAGAATAATGGCAAGCACCTCTGGACAGGCAAATACCTTTGTTGGAACATACAACTACATGTCTCCAGAGAGGATTGGAGGAGAGAGATATGACAAGAAAAGTGATATTTGGAGTTTGGGACTGGTTTTACTGGAGTGTGCAATTGGACAGTTTCCTTATTCTCCACCAGAGGAAGGTGGAAGCTTGGATAACTTCTTTGATATTATGCAAGTCATTGTTAATGGACCTCCTCCTTCTGCTCCTTCTTCCGGATTTTCTCCGCAGTTCTGCTCCTTCATTTCCGATTGCTTAGAAAAAGAACCGAAAGACAGACTCTCGGCTCGTGAGCTCATGGTGCATCCTTTTGTGAATGCATATGAAGACTTGGATGTGGATCTATCATCATACTTCGCAGGCGCTGGATCGCCATTTCCACCCTCTTAG 1008 42.96 MYFCRTNSGTFMDGDLLINREGVQIVCQVQKEAKNSCQLNPSDSQWSLEDLDTVKVIGKGNGGVVQLVKHKATGQFFALKVIQMKIEESYRKQIASELKINQSARSPYVVVCYQSFYYNGAISIILEYMDGGSLADFLKQVKSIPEEYLAAICKQVLRGLLYLHHEMHVIHRDLKPSNLLINHKGEVKISDFGVSRIMASTSGQANTFVGTYNYMSPERIGGERYDKKSDIWSLGLVLLECAIGQFPYSPPEEGGSLDNFFDIMQVIVNGPPPSAPSSGFSPQFCSFISDCLEKEPKDRLSARELMVHPFVNAYEDLDVDLSSYFAGAGSPFPPS 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 17706733 17709730 + Bpe010911.1 Bpe13g01246 114026

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g01246 335 Gene3D Transferase(Phosphotransferase) domain 1 131 329 - -
Bpe13g01246 335 ProSiteProfiles Protein kinase domain profile. 51 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe13g01246 335 Pfam Protein kinase domain 53 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe13g01246 335 SUPERFAMILY Protein kinase-like (PK-like) 42 315 IPR011009 -
Bpe13g01246 335 ProSitePatterns Protein kinases ATP-binding region signature. 57 80 IPR017441 GO:0005524
Bpe13g01246 335 CDD PKc_MAPKK_plant_like 49 315 - -
Bpe13g01246 335 Gene3D Phosphorylase Kinase; domain 1 21 130 - -
Bpe13g01246 335 PANTHER MAP KINASE KINASE 5 330 - -
Bpe13g01246 335 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Bpe13g01246 335 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 5 330 - -
Bpe13g01246 335 SMART serkin_6 51 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g01246 K20603 MKK2; mitogen-activated protein kinase kinase 2 [EC:2.7.12.2] - jre:109009962 488.419
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe01g00601 Bpe13g01246 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g02226 Bpe-Chr2:23279875 Bpe13g01246 Bpe-Chr13:17706733 1.09E-140 dispersed
Bpe03g00025 Bpe-Chr3:459401 Bpe13g01246 Bpe-Chr13:17706733 1.44E-72 dispersed
Bpe13g01246 Bpe-Chr13:17706733 Bpe11g00463 Bpe-Chr11:3584914 2.03E-41 dispersed
Bpe01g00601 Bpe-Chr1:3948403 Bpe13g01246 Bpe-Chr13:17706733 1.61E-180 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g140 . Blo16g00976 . Bda11g01036 Bpe01g00601 . . Bma11g00589 Cmo10g00767 Cmo11g00726 . . . . Sed08g0891 Cpe04g01040 Cpe18g00340 Bhi02g01848 Tan09g1114 Cmetu09g0930 . . . . Cla11g00151 Cam11g0173 Cec11g0175 Cco11g0187 Clacu11g0310 Cmu11g0162 Cre11g0661 . . . Cone7ag0750 Lsi06g00302 Csa02g00036 Chy05g01452 Cme02g00272 . Blo14g00559 Bda02g00383 . . Bpe13g01246 . . Sed05g1512 . . Cma10g00741 Cma11g00712 Car10g00666 Car11g00592 . . Bhi06g01629 Tan08g0048 Cmetu04g1006 . Hepe08g2677 . . Cla03g01476 Cam03g1552 Cec03g1594 Cco03g1588 Clacu03g1576 Cmu03g2132 Cre03g1805 Lsi11g00177 Csa01g02954 Chy02g01249 Cme05g02055
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe01g00601 CCT 1 327 MAP Kinase Kinase Gene Family AT4G26070 68.8 1.8e-131 465.7
Bpe13g01246 CCT 3 334 MAP Kinase Kinase Gene Family AT4G26070 61.7 2.1e-119 425.6
Bpe02g02226 . 26 374 MAP Kinase Kinase Gene Family AT4G26070 52.8 1.2e-101 366.7
Bpe01g00601 CCT 1 301 MAP Kinase Kinase Gene Family AT4G29810 72.8 5.0e-129 457.6
Bpe13g01246 CCT 4 307 MAP Kinase Kinase Gene Family AT4G29810 66.1 7.4e-117 417.2
Bpe02g02226 . 10 348 MAP Kinase Kinase Gene Family AT4G29810 55.0 2.3e-102 369.0
Bpe03g00025 . 36 518 MAP Kinase Kinase Gene Family AT5G40440 77.6 1.0e-226 782.7
Bpe02g02226 . 1 378 MAP Kinase Kinase Gene Family AT5G56580 78.9 9.1e-166 579.7
Bpe01g00601 CCT 1 316 MAP Kinase Kinase Gene Family AT5G56580 61.5 6.9e-113 404.1
Bpe13g01246 CCT 6 322 MAP Kinase Kinase Gene Family AT5G56580 60.7 2.1e-109 392.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001594 2 3 1 2 2 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 2 2 2 2 9 2 1 71
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63687 PF00069 Pkinase 9.10E-71 CL0016 Bpe PK