Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g01268 ATGATGCTCGGCAAACCCTACCGCACCGACGTCCTTCCATGGTCGGTCGTCGACGATGATCCAACAACTGAGGGGTTCTCTTCTTTTGGCAGATCTGTTCACTCTGAAGGCAATGCAAATGGGGGAGACTACTCTCCTCAGTATCTGCAAGATGCTTTGATGGCGTTGCAGCGGTACCTGCCGTCGAATGAGCCGGACGTGGACTATGACGGTGAGGGTTTTGGTAGGGAAATGGATTCTCCGGTTGACGCTTACTCCTGTGACCATTTCCGGATGTTTGAGTTCAAAGTCAGGAGGTGCGCTAGAGGAAGGTCTCATGACTGGACAGAGTGTCCGTACGCTCATCCCGGCGAGAAGGCTCGCCGGAGAGATCCGAGGAAGTATCACTATTCTGGCACGGCTTGTCCAGATTTTCGTAAGGGAAGCTGCAAGAGAGGCGATTCATGCGAGTTCGCACATGGTGTTTTCGAGTGCTGGCTTCACCCGGCGCGGTACAGGACTCAGCCGTGCAAGGACGGAACGAGTTGCCGGCGAAGGGTTTGTTTCTTCGCTCACACGGCGGAGCAACTCCGAGTTCTACCACATCAGAGTCCGAGGAGTTCAAACGCTGCATCATACTCCTACGACGGTTCACCTCTCCGGCAAGCGATCGAAGCGTCCTGTGCAAAAACGCTGACGTTTTTGTCTTCTCCAACAATTTCACCGCCGGTGACTCCTCAAGCAGAGTCTCCCCCCATGTCGCCGATGGCTCAGTCTCTCAGCCGGTCTTTCGGATCTAACCCAGTTGGAGAAATGGTGGCCTCCCTTCGAAACTTGCAGCTGAGCAAAGTGAAATCTCTTCCCTCTGCTTGGAATGTTCAAATAGGAGGGTCTCCGAGAGGATCCATCCTCCGACCTGACGGCTGCAGCCTACCGGTGACGCCAACTCGAGCTTCACCTCGTCCTGCCAATGGCGGATACCTGGATTTCTGGGAACAGACCGTGGAGGAGGAGCCAGCGATGGAAAGGGTAGAGTCAGGGAGAGATCTGAGGGCCAAAATGTTTGAAAAACTGAGCAAGGAAAACTCCATCAATGGAGCCCATCCCGATTCCTCGTCTGGTACACCGGACGTGGGCTGGATTTCGGAGCTGGTGCAGTAG 1140 54.74 MMLGKPYRTDVLPWSVVDDDPTTEGFSSFGRSVHSEGNANGGDYSPQYLQDALMALQRYLPSNEPDVDYDGEGFGREMDSPVDAYSCDHFRMFEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGSCKRGDSCEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTAEQLRVLPHQSPRSSNAASYSYDGSPLRQAIEASCAKTLTFLSSPTISPPVTPQAESPPMSPMAQSLSRSFGSNPVGEMVASLRNLQLSKVKSLPSAWNVQIGGSPRGSILRPDGCSLPVTPTRASPRPANGGYLDFWEQTVEEEPAMERVESGRDLRAKMFEKLSKENSINGAHPDSSSGTPDVGWISELVQ 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 17880145 17881284 - Bpe010931.1 Bpe13g01268 114048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g01268 379 PANTHER UNKEMPT FAMILY MEMBER 9 379 IPR045234 -
Bpe13g01268 379 MobiDBLite consensus disorder prediction 354 379 - -
Bpe13g01268 379 SUPERFAMILY CCCH zinc finger 128 158 IPR036855 GO:0046872
Bpe13g01268 379 Gene3D - 129 192 - -
Bpe13g01268 379 SMART c3hfinal6 164 187 IPR000571 GO:0046872
Bpe13g01268 379 SMART c3hfinal6 129 155 IPR000571 GO:0046872
Bpe13g01268 379 ProSiteProfiles Zinc finger C3H1-type profile. 130 156 IPR000571 GO:0046872
Bpe13g01268 379 MobiDBLite consensus disorder prediction 232 257 - -
Bpe13g01268 379 MobiDBLite consensus disorder prediction 357 372 - -
Bpe13g01268 379 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 134 154 IPR000571 GO:0046872
Bpe13g01268 379 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 9 379 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe02g02219 Bpe13g01268 CCT
Bpe01g00577 Bpe13g01268 CCT
Bpe01g00577 Bpe13g01268 ECH
Bpe02g02219 Bpe13g01268 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe13g01268 Bpe-Chr13:17880145 Bpe04g01472 Bpe-Chr4:21301267 6.93E-60 dispersed
Bpe02g00475 Bpe-Chr2:3085436 Bpe13g01268 Bpe-Chr13:17880145 4.86E-102 transposed
Bpe02g01775 Bpe-Chr2:20086533 Bpe13g01268 Bpe-Chr13:17880145 4.40E-126 transposed
Bpe01g00577 Bpe-Chr1:3758965 Bpe13g01268 Bpe-Chr13:17880145 4.13E-124 wgd
Bpe13g01268 Bpe-Chr13:17880145 Bpe02g02219 Bpe-Chr2:23235449 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22368 PF00642 zf-CCCH 1.60E-07 CL0537 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g01268 - - jre:109001913 563.918