Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g01272 ATGTCGTGGCAAACATATGTTGATGAACATCTGATGTGCGACATCGAAGGAAATCAGCTCACTGCAGCTGCAATCATCGGCCATGACGGTTGCGTTTGGGCCCAGAGCTCCACCTTCCCTCAGTTCAAGCCTGAAGAAATATCCGCGATTATGAGTGACTTTGCTGAGCCTGGAACACTAGCTCCAACTGGCTTGTACCTTGGAGGGGCAAAATACATGGTGATCCAAGGCGAGCCTGGAGCTGTCATTCGTGGGAAGAAGGGCCCTGGTGGTGTTACAGTTAAAAAGACAGGTTTGGCCTTGATCATTGGTATATATGATGAGCCAATGACGCCTGGTCAATGCAACATGATTGTTGAAAGGCTTGGAGACTATCTCATCGAGCAGAATCTCTAG 396 48.74 MSWQTYVDEHLMCDIEGNQLTAAAIIGHDGCVWAQSSTFPQFKPEEISAIMSDFAEPGTLAPTGLYLGGAKYMVIQGEPGAVIRGKKGPGGVTVKKTGLALIIGIYDEPMTPGQCNMIVERLGDYLIEQNL 131
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 17925914 17927824 + Bpe010935.1 Bpe13g01272 114052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g01272 131 Gene3D Dynein light chain 2a, cytoplasmic 1 130 - -
Bpe13g01272 131 SUPERFAMILY Profilin (actin-binding protein) 2 130 IPR036140 -
Bpe13g01272 131 PANTHER PROFILIN 1 130 IPR005455 GO:0003779
Bpe13g01272 131 PANTHER PROFILIN 1 130 - -
Bpe13g01272 131 CDD PROF 2 130 IPR005455 GO:0003779
Bpe13g01272 131 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779
Bpe13g01272 131 SMART prof_2 1 131 IPR005455 GO:0003779
Bpe13g01272 131 PRINTS Plant profilin signature 84 99 IPR005455 GO:0003779
Bpe13g01272 131 PRINTS Plant profilin signature 104 117 IPR005455 GO:0003779
Bpe13g01272 131 PRINTS Plant profilin signature 52 66 IPR005455 GO:0003779
Bpe13g01272 131 PRINTS Plant profilin signature 117 130 IPR005455 GO:0003779
Bpe13g01272 131 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779
Bpe13g01272 131 PRINTS Plant profilin signature 27 40 IPR005455 GO:0003779
Bpe13g01272 131 PRINTS Plant profilin signature 71 80 IPR005455 GO:0003779
Bpe13g01272 131 PRINTS Profilin signature 40 60 IPR005455 GO:0003779
Bpe13g01272 131 PRINTS Profilin signature 3 12 IPR005455 GO:0003779
Bpe13g01272 131 PRINTS Profilin signature 100 113 IPR005455 GO:0003779
Bpe13g01272 131 PRINTS Profilin signature 113 130 IPR005455 GO:0003779
Bpe13g01272 131 PRINTS Profilin signature 64 78 IPR005455 GO:0003779
Bpe13g01272 131 PRINTS Profilin signature 21 30 IPR005455 GO:0003779
Bpe13g01272 131 Pfam Profilin 1 130 IPR005455 GO:0003779
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00568 Bpe-Chr1:3681794 Bpe13g01272 Bpe-Chr13:17925914 8.52E-73 wgd
Bpe13g01272 Bpe-Chr13:17925914 Bpe02g02225 Bpe-Chr2:23277124 1.57E-90 wgd
Bpe13g01272 Bpe-Chr13:17925914 Bpe08g00505 Bpe-Chr8:3342294 5.01E-74 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g01272 K05759 - zju:107435338 237.654