Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g01320 ATGAAGAAAGGTGGCTGTTTAATATCAAACGATCCAAAATTAACTCGAACTATACTCTATGGCGTGAGTGGAATCGTTAGGCCTGGTGAACTTTTAGCAATGTTGGGCACTTCGGGAAGTGGAAAGACGACCCTCTTGACCGCCCTCTCCGGCCGCTACTTGCCAGGGAAGATCTCCGGCGAAATAGTCTACAACGGAAAGCCATTCTCCACCTCAATAAAACGTAACACAGGTTTTGTCACCCAAGACGACGTGCTTTATCCTCATCTCACAGTGCTTGAGACCCTAAAATATGCTGCCATTTTGAAGTTACCAAAAGAACTTACAAAATCAGAGAAGGTCGAACATGCTGAGATGATAATAATGGAATTAGGGTTAACACAATGTCCTGACAGTGTGATTGGTGGAGGCCTGTTACGAGGCATTTCAGGAGGTGAGCGTAAAAGGGTAAGTATAGGGCATGAGATGATTTTAAATCCTAGCCTCTTGCTCCTTGACGAACCCACTTCCGGGCTAGACTCGACAACAGCTCAGCAGATAGTCAAAAGGCTGAGAAGGATGGCTCAAGGTGGTCGGACTGTGGTGACGACAATTCACCAACCGCCGAGCAGACTGTACAGAATGTTTGACAAGGTGGTGGTGTTGTCGGACGGCTGTCTGATTTATAGTGGACGTGCAGATGAGGTCGTGGGCTATTTTGGGTCCATTGGTTACGAGCTAGGTTCCACTCACATGAATCCTGCTGATTTTCTGCTTGACCTAGCGAATGGCATAGCACCAAATGCAAAACAAGGTGATGAGCTTGATTTCAATGGGAGCCTAGAAAATGATGGCCCTCGAAATATAATCAAGCAGTCCCTTATATCATCCTACAAGAAGAATCTCTATCCTCGGCTGAAGGCTGAGATGGAATCAGATTGCAACTACTCAGCCATGTCAAAATCAGAAGAATCACCAAGTAGAAGTTGTGCGAATCAGTGGAGCACTCGCTGGTTGGAGGAATTTATTGTGTTGCTAAGGAGGGGTCTAAAAGAGAGGAGACATGAATCTTATTCCAGTTTAAGGATTGTCCAAGTGATGTCAGTTTCTATTCTTTCTGGACTTTTATGGTGGCAATCTACCATCTCTCACTTACAAGATCAGGTTGGACTTCTTTTCTTCTTCTCCATATTCTGGGGTTACTTTCCTCTCTTCAATGCCATATTTGCCTTTCCATTAGAGCAGCCAATGCTGATCAAAGAACGTTCTGCCGGAATGTACCGTCTCTCCTCCTACTTCTTTGCAAGAACCGCCGGAGACTTGCCAATGGAGCTCGTCCTTCCAATCATTTTCACCAGTATTACATATTGGATGGGAGGTCTAAAACCATCACTTCTTACATTTGTACAAACCATCTTCATCATCCTCTTCAATGTGTTAGTTTCACAAGGTGTAGGCCTAGCACTTGGAGCTATTTTAATGGACCTGAAACAGGCCACAACCCTAGCTTCAGTCACCATGTTGGTGTTTTTACTTGCAGGTGGATATTATATTCAACACATCCCACTTTTCATAGCCTGGTTAAAGTACATTTCCTTCAGCCATTACTGCTACAGGCTTCTTGTTGAAGTTCAATACTCAGCTACCGAGGTTTATGAATGTGGGTTTGGACAATTTTGCAAGATAATGGATTTTCCTGCCATTAAATATCTAGGTCTTGATAATATTTGGTTGGATTTGTGTGCTTTGAGTCTTATGTTGGTGGGCTATAGGGTTTTGGCCTATTTTGCTTTGAAGATGGGACAGCCTCATTGA 1794 43.92 MKKGGCLISNDPKLTRTILYGVSGIVRPGELLAMLGTSGSGKTTLLTALSGRYLPGKISGEIVYNGKPFSTSIKRNTGFVTQDDVLYPHLTVLETLKYAAILKLPKELTKSEKVEHAEMIIMELGLTQCPDSVIGGGLLRGISGGERKRVSIGHEMILNPSLLLLDEPTSGLDSTTAQQIVKRLRRMAQGGRTVVTTIHQPPSRLYRMFDKVVVLSDGCLIYSGRADEVVGYFGSIGYELGSTHMNPADFLLDLANGIAPNAKQGDELDFNGSLENDGPRNIIKQSLISSYKKNLYPRLKAEMESDCNYSAMSKSEESPSRSCANQWSTRWLEEFIVLLRRGLKERRHESYSSLRIVQVMSVSILSGLLWWQSTISHLQDQVGLLFFFSIFWGYFPLFNAIFAFPLEQPMLIKERSAGMYRLSSYFFARTAGDLPMELVLPIIFTSITYWMGGLKPSLLTFVQTIFIILFNVLVSQGVGLALGAILMDLKQATTLASVTMLVFLLAGGYYIQHIPLFIAWLKYISFSHYCYRLLVEVQYSATEVYECGFGQFCKIMDFPAIKYLGLDNIWLDLCALSLMLVGYRVLAYFALKMGQPH 597
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 18315576 18317676 - Bpe010983.1 Bpe13g01320 114100

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g01320 597 SMART AAA_5 28 219 IPR003593 -
Bpe13g01320 597 Pfam ABC-2 type transporter 199 262 IPR043926 GO:0140359
Bpe13g01320 597 Pfam ABC-2 type transporter 334 538 IPR013525 GO:0016020|GO:0140359
Bpe13g01320 597 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 2 594 - -
Bpe13g01320 597 Pfam ABC transporter 21 170 IPR003439 GO:0005524
Bpe13g01320 597 Gene3D - 11 235 IPR027417 -
Bpe13g01320 597 PANTHER ABC TRANSPORTER G FAMILY MEMBER 21 2 594 - -
Bpe13g01320 597 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 16 239 IPR027417 -
Bpe13g01320 597 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1 242 IPR003439 GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g01320 K05681 ABCG2, CD338; ATP-binding cassette, subfamily G (WHITE), member 2 - pvy:116132157 890.952
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00338 Bpe-Chr4:2144599 Bpe13g01320 Bpe-Chr13:18315576 0 dispersed
Bpe07g00048 Bpe-Chr7:409729 Bpe13g01320 Bpe-Chr13:18315576 0 dispersed
Bpe09g00218 Bpe-Chr9:1540068 Bpe13g01320 Bpe-Chr13:18315576 0 dispersed
Bpe10g00934 Bpe-Chr10:14913147 Bpe13g01320 Bpe-Chr13:18315576 0 dispersed
Bpe13g01320 Bpe-Chr13:18315576 Bpe02g00689 Bpe-Chr2:4676704 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g240 . Blo16g01044 . . Bpe13g01320 . . . Cmo04g01619 . . . Car04g01598 . . . Cpe01g01375 . . . . . . . . . . . . . . Cone13ag0868 . Cone6ag0480 . . . . . . . . . . . . Bma06g00780 . . . . Cma15g01421 . . Cpe13g00026 . Bhi12g01423 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001139 3 3 3 3 3 2 2 2 2 2 2 2 4 2 2 4 2 5 4 2 2 2 2 3 3 1 3 3 3 3 79