Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g01321 TTTTTTAGCGCAATGACGGATACTACGGATGATATAGCGGAGGAAATCTCCTTCCAGAGCTTTGATGATGACTGCAAATTGCTCGGAAACCTCCTCAACGATGTGTTGCAGAGAGAAGTCGGAAGCGAGTTCATGGAGAAAGTTGAGAGAACGCGAGTTCTTGCGCAGTCGGCATGTAATATGAGGATGGCTGGCATTGAGGATACGGCGGAGCTTTTGGAGAAGCAGCTCGCGACAGAGATATTGAACATGACTTTAGAAGAAGCCTTAACACTTGCTCGTGCATTTAGTCACTATCTCAATTTGATGGGCATCGCTGAAACTCATCACAGGGTTCGAAAGGCGCGGAATGTAGCTCATCTGTCGAGATCTTGTGACGATGTCTTTAACCAGCTAGTGCAGGGTGGAATCTCTCAGGAGGAGCTTTACAACACCTTCTGCAAGCAGGAAGTCGAGATTGTCCTTACTGCACATCCAACTCAAATTAATCGTCGAACATTACAGTACAAACATGTTCGAATTGCACATTTATTGGACTATAACGACAGGCCCGATCTTAGTCATGAAGATCGAGAAATGCTGATTGAAGATCTGGTGAGAGAGATAATCTCCATATGGCAGACAGATGAGCTGAGACGTCACAAGCCTTCACCAGTTGATGAAGCTAGGGCAGGCTTGAACATTGTGGAGCAGACCCTATGGAAAGCTGTTCCTCATTATTTACGCCGTGTCAGTAATGCCTTAAAGAAGCATACAGGGAAGCCTCTTCCACTGACATGTACACCAATAAAATTTGGCTCTTGGATGGGAGGGGATAGAGATGGAAATCCTAATGTGACAGCAAAGGTCACAAAGGATGTTTCGCTTCTGTCTAGGTGGATGGCTATTGATTTGTATTTTCGAGAGATTGACAGTCTAAGGTTTGAACTTTCCATGGATCGATGCAGTGACCAATTATCAGAATTGGCTCATGAAATTCTAGAAAAAGAATCTTCTATGGAGGAACGACACGAGAGTTGGAATCAATCTCTGGGAAGAAGTGAGAAGCCTCAAGGTCAACATCCTCCAGCCTTTCCTACACAACTTCCACCTGGAGCTGATCTTCCCTCCTGCACCGGCAAGATGTTTACTGCCTTAGGTGGTCACCATTCTTCAAGTTCAGATTCTCTGATCAGTGATTCTAGCCAAAATACTCGTTTACCATTATCAAATGGAACTTCAGTTAACTCTAGCACTTCTCAGCCAACTGCAGTACCTCGGTCAGGTTCTTTCAACTCTATGCAAGCACTCACTCCGAGGAAACTATATGCAGATTCTCAGACTGGGAGATCCAGTTTCCACAAGCTTTTAGAACCCAAGCTCTTAAATCGTCCTGGCATAGCTCCTTACAGAGTTGTTCTTGGCAGTGTAAAAGAAAAGCTCATGAAAACTCGGAGACGAGTGGAACTTCTTATTGAGGATCTTCCCTGTGAATATGATCCTTCGGAGTATTATGAATCAGCCGATCAAATTTTGGAGCCTCTACTACTTTGCTATCAGTCTCTGCAATCTTGTGGATCTGGTGTGCTTGCTGATGGGCGGCTGGCGGATCTGATACGAAGAGTTTCTACCTTTGGGATGGTACTTATGAAGCTCGATCTTCGTCAGGCATGTTATGAATCTGGCAGACATGCTGAAACACTAGATGCAATTACGAGATACTTGGATATGGGCACGTACAGTGACTGGGATGAAGAAAAGAAGCTTGAATTTCTAGCAAAAGAGCTGAAAGGGAAGAGGCCCCTGGTTCCATCGACTATAGAGGTTACTTCTGATGTTAAAGAGGTCTTGGACACATTCCGTGTTGCTGCTGAACTCGGCACTGATTCACTGGGGGCTTATGTGATCTCTATGGCGTCCAATGCGAGTGATGTACTTGCTGTGGAACTTTTGCAAAAGGATGCCCGACTTGCTGTTAGCGGAGAGCTAGGAAAACCATGCCCTGGTGGAACGCTGCGGGTGGTTCCATTGTTTGAAACTGTGAAAGACTTGCGAGGAGCAGGATCAGTGATTAGAAAACTACTGTCTATTGATTGGTACCACAACCACATTCTAAGGCATCACAACGGACATCAAGAGGTGATGGTTGGCTACTCTGATTCTGGTAAAGATGCTGGGCGTTTTACTGCTGCGTGGGAACTTTACAAAGCTCAAGAAGATGTTGTGGCTGCTTGTAATGACTATGGTATTAAGGTTACTCTGTTTCATGGTCGTGGAGGGAGTATTGGGCGTGGTGGCGGACCCACTTATCTTGCCATCCAATCTCAACCACCTGGTTCTGTAATGGGTACGCTTCGATCAACTGAGCAAGGTGAGATGGTGCAGGCCAAGTTCGGGCTCCCACAGACAGCTGTCAGACAACTAGAGATATACACAACAGCTGTGCTCCTTGCAACATTACGGCCCCCACAACCACCTCGAGAAGAAAAGTGGCGAAATCTTATGGAAGAGATCTCAAAAATTAGTTGCCAGAATTACCGGAGTGTAGTCTATGAGAATCCCGAATTTCTAGCTTACTTCCATGAGGCCACTCCTCAGGCAGAGCTCGGCTTCCTCAACATAGGAAGCCGCCCGACGAGAAGAAAGGCCTCGATCGGAATTGGCCATCTCCGTGCCATTCCATGGGTGTTCGCCTGGACCCAAACTAGGTTTGTTCTTCCAGCTTGGCTCGGAATTGGAGCCGGTCTGAAGGGAGTATGCGAAAAAGGACATACTGATGACTTAAAAGCAATGTACAAAGAATGGCCTTTCTTTCAATGTACCATTGATCTTATCGAGATGGTTTTAGGAAAAGCTGACATTCCTATAGCCAAGCACTATGATGAAATTCTAGTGTCCGAGAACCGGCAGAAGCTTGGTGCCGAACTGAGAAGGGAACTTTTAGCGACAGAACGATATGTTTTGGTCGTGAGTGAGCATGAGAAACTGTCGGAAAACAACAGGAGCTTGAGGAGACTAATTGAGAGTAGGCTGCCGTATCTTAATCCGATGAACATGTTGCAGGTTGAAATATTGAAGAGGCTTAGACGTGATGAGGATAATCATAAGCTGAGAGATGCATTACTTATCACCATCAATGGAATAGCTGCTGGGATGAGGAACACTGGT 3147 45.79 FFSAMTDTTDDIAEEISFQSFDDDCKLLGNLLNDVLQREVGSEFMEKVERTRVLAQSACNMRMAGIEDTAELLEKQLATEILNMTLEEALTLARAFSHYLNLMGIAETHHRVRKARNVAHLSRSCDDVFNQLVQGGISQEELYNTFCKQEVEIVLTAHPTQINRRTLQYKHVRIAHLLDYNDRPDLSHEDREMLIEDLVREIISIWQTDELRRHKPSPVDEARAGLNIVEQTLWKAVPHYLRRVSNALKKHTGKPLPLTCTPIKFGSWMGGDRDGNPNVTAKVTKDVSLLSRWMAIDLYFREIDSLRFELSMDRCSDQLSELAHEILEKESSMEERHESWNQSLGRSEKPQGQHPPAFPTQLPPGADLPSCTGKMFTALGGHHSSSSDSLISDSSQNTRLPLSNGTSVNSSTSQPTAVPRSGSFNSMQALTPRKLYADSQTGRSSFHKLLEPKLLNRPGIAPYRVVLGSVKEKLMKTRRRVELLIEDLPCEYDPSEYYESADQILEPLLLCYQSLQSCGSGVLADGRLADLIRRVSTFGMVLMKLDLRQACYESGRHAETLDAITRYLDMGTYSDWDEEKKLEFLAKELKGKRPLVPSTIEVTSDVKEVLDTFRVAAELGTDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGKPCPGGTLRVVPLFETVKDLRGAGSVIRKLLSIDWYHNHILRHHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNDYGIKVTLFHGRGGSIGRGGGPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATLRPPQPPREEKWRNLMEEISKISCQNYRSVVYENPEFLAYFHEATPQAELGFLNIGSRPTRRKASIGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCEKGHTDDLKAMYKEWPFFQCTIDLIEMVLGKADIPIAKHYDEILVSENRQKLGAELRRELLATERYVLVVSEHEKLSENNRSLRRLIESRLPYLNPMNMLQVEILKRLRRDEDNHKLRDALLITINGIAAGMRNTG 1049
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 18332084 18340823 - Bpe025286 Bpe13g01321 114101

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g01321 1049 PRINTS Phosphoenolpyruvate carboxylase signature 265 280 IPR021135 GO:0006099|GO:0008964|GO:0015977
Bpe13g01321 1049 PRINTS Phosphoenolpyruvate carboxylase signature 153 166 IPR021135 GO:0006099|GO:0008964|GO:0015977
Bpe13g01321 1049 PRINTS Phosphoenolpyruvate carboxylase signature 206 222 IPR021135 GO:0006099|GO:0008964|GO:0015977
Bpe13g01321 1049 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 4 12 1049 - -
Bpe13g01321 1049 Hamap Phosphoenolpyruvate carboxylase [ppc]. 13 1049 IPR022805 GO:0006099|GO:0008964|GO:0015977
Bpe13g01321 1049 MobiDBLite consensus disorder prediction 379 425 - -
Bpe13g01321 1049 Pfam Phosphoenolpyruvate carboxylase 23 342 IPR021135 GO:0006099|GO:0008964|GO:0015977
Bpe13g01321 1049 Pfam Phosphoenolpyruvate carboxylase 452 1049 IPR021135 GO:0006099|GO:0008964|GO:0015977
Bpe13g01321 1049 MobiDBLite consensus disorder prediction 328 425 - -
Bpe13g01321 1049 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 12 1049 IPR021135 GO:0006099|GO:0008964|GO:0015977
Bpe13g01321 1049 Gene3D Phosphoenolpyruvate/pyruvate domain 423 540 - -
Bpe13g01321 1049 Gene3D Phosphoenolpyruvate/pyruvate domain 293 352 - -
Bpe13g01321 1049 MobiDBLite consensus disorder prediction 328 343 - -
Bpe13g01321 1049 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 23 1049 IPR015813 GO:0003824
Bpe13g01321 1049 ProSitePatterns Phosphoenolpyruvate carboxylase active site 2. 707 719 IPR033129 -
Bpe13g01321 1049 ProSitePatterns Phosphoenolpyruvate carboxylase active site 1. 154 165 IPR018129 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g01321 K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] - qsu:112006698 1762.66
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe09g00257 Bpe-Chr9:1883106 Bpe13g01321 Bpe-Chr13:18332084 5.96E-53 dispersed
Bpe13g01321 Bpe-Chr13:18332084 Bpe15g00191 Bpe-Chr15:12933646 8.35E-54 dispersed
Bpe13g01321 Bpe-Chr13:18332084 Bpe11g00450 Bpe-Chr11:3503637 7.18E-52 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g241 . Blo16g01045 . Bda11g01124 Bpe13g01321 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g02069 . . . . . Bda11g01124 . . . Bma06g00779 . . . . Cma15g01420 . Car15g01282 Cpe13g00027 . Bhi12g00828 . . . . . Lcy10g0852 Cla01g00567 Cam01g0590 Cec01g0582 Cco01g0606 Clacu01g0585 Cmu01g0556 Cre09g1951 Lsi09g00615 . Chy09g00939 Cme09g01467
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008238 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 3 1 35