Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g01329 ATGCATCTTAAGGCAGCAAAGAGGGTGCTTAGATATATGAAAGACACGTGTGATTTTGGCATCAGATTCACGAGGAGCAAGGAGTTCAAACTGACTGATTTTATTGACAGTGATTGGGGAGGTTCCATTGATGATATGAAAGCACATCAGATTACTGTTTTACACTTGATTCTAGTATTTTCTCATGGAGCTCAAATAACTTACTTCGTTGCTGGTTCCGATATTGGAAAATTCACAATGAAAATCATCAACGACGATCGAGCTCTAAACAAAAGCGTCCATTTCCGACCAAAATGTAACTTATACGACATGAACCAACTTGCCTCGCTGTGGGAGAAGAAAATCGGCAGAACACTTCCAAGAGTAATCATAAGTGAAGACGATCTCTTGGCCGCAGCTGCAGAGATGATAATTCCAGAGAGTATAGTCGCATCGTTTACGCACGATATATTCATAAAAGGGTGTCAAATTAACTACTCATGTGATGGTCCTAACGATCTTGAAGTGACCAATCTTTACCCAGACGAGGATTTTAAGACGTTGGACGAGTGCTTCACTGAGTTTGCTCTGAAATTGAACGGAATGCAGCCGCAGAGCGAGAACGAGAAGCCAATGGCACCAATGGCTAATTCTGTGTTGAAGCACTTCCCATCGCTGGAACTTAGTGCTTGA 672 42.11 MHLKAAKRVLRYMKDTCDFGIRFTRSKEFKLTDFIDSDWGGSIDDMKAHQITVLHLILVFSHGAQITYFVAGSDIGKFTMKIINDDRALNKSVHFRPKCNLYDMNQLASLWEKKIGRTLPRVIISEDDLLAAAAEMIIPESIVASFTHDIFIKGCQINYSCDGPNDLEVTNLYPDEDFKTLDECFTEFALKLNGMQPQSENEKPMAPMANSVLKHFPSLELSA 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 18483866 18494620 - Bpe010991.1 Bpe13g01329 114109

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g01329 223 Pfam NmrA-like family 66 118 IPR008030 -
Bpe13g01329 223 PANTHER LEUCANTHOCYANIDIN REDUCTASE 56 197 - -
Bpe13g01329 223 Gene3D - 57 185 - -
Bpe13g01329 223 PANTHER PINORESINOL REDUCTASE-RELATED 56 197 - -
Bpe13g01329 223 Gene3D - 74 175 - -
Bpe13g01329 223 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 40 186 IPR036291 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g01329 K13081 LAR; leucoanthocyanidin reductase [EC:1.17.1.3] - cit:102621411 211.46
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe02g02287 Bpe13g01329 CCT
Bpe02g02287 Bpe13g01329 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe11g00301 Bpe-Chr11:2203922 Bpe13g01329 Bpe-Chr13:18483866 3.10E-18 dispersed
Bpe11g00302 Bpe-Chr11:2208836 Bpe13g01329 Bpe-Chr13:18483866 8.85E-16 dispersed
Bpe13g01329 Bpe-Chr13:18483866 Bpe02g02287 Bpe-Chr2:23646304 9.13E-83 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g257 Blo01g00484 Blo16g01051 Bda01g02098 . Bpe13g01329 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0473 Cone9ag0486 . . . . . . . . . Bpe02g02287 . Bma06g00771 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015267 1 0 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 2 12