Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g01331 GCCATGCAAACGCCTTCGTTTTCCAGCATCAGTGGAAGTGGCTGTTTTGAACCAGATGAAGAAGATGAAGAATCCATTTTCCTTTCTCTTTGTCCTCCGGGCCAGCCCATCTCTAAGGACCATTTTCTTAACCAGTTTTCTTCTTCTTCGTCTTCTTCCTCGCACCAACCTCTAATTTATCACCCAAACCCTAACGTAGACAATGGTGTTACAGTAGCCTTGCACATTGGTCCACCTTCCTGTACGAACCCTAACGAACCCTTTTTTCGTCCTCTCGACGGCCATTACTGGATTCCTTCACAAGCTCAAATCCTCGTCGGTCCTACTCAGTTTTCTTGTACTGTCTGCGACAAAACTTTCAACAGATATAATAACATGCAGATGCATATGTGGGGACATGGATCGCAATACAGGAAAGGTCCGGAATCATTAAAAGGAACAAAAGCAGCATCTTCTTTGCTTAGATTGCCTTGCTATTGCTGCGCAGAAGGGTGCAAAAACAACATAGAACATTCAAGATCGAAGCCATTAAAGGATTTCAGAACTCTGCAGACCCATTACAAGAGAAAGCATGGGGCGAAGCCATTTGGGTGCAGAAAATGTGGAAAGCATTTTGCAGTGAGAGGAGATTGGAGAACTCACGAGAAAAACTGTGGAAAGCTCTGGTTTTGCATTTGTGGATCTGATTTCAAGCACAAAAGGTCTCTGAAAGATCACGTTCGAGCCTTTGGAAATGGCCATGCATCTCATTCTGTTGAACTTTGCCAGGTTGATGAGGAAGAAAACTTGGATTATCAGGAGGAAGAACAT 810 43.95 AMQTPSFSSISGSGCFEPDEEDEESIFLSLCPPGQPISKDHFLNQFSSSSSSSSHQPLIYHPNPNVDNGVTVALHIGPPSCTNPNEPFFRPLDGHYWIPSQAQILVGPTQFSCTVCDKTFNRYNNMQMHMWGHGSQYRKGPESLKGTKAASSLLRLPCYCCAEGCKNNIEHSRSKPLKDFRTLQTHYKRKHGAKPFGCRKCGKHFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGNGHASHSVELCQVDEEENLDYQEEEH 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 18557497 18558464 - Bpe025287 Bpe13g01331 114111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g01331 270 Gene3D Classic Zinc Finger 155 243 - -
Bpe13g01331 270 PANTHER ZINC FINGER PROTEIN WIP6 5 269 - -
Bpe13g01331 270 SUPERFAMILY beta-beta-alpha zinc fingers 98 133 IPR036236 -
Bpe13g01331 270 ProSitePatterns Zinc finger C2H2 type domain signature. 113 133 IPR013087 -
Bpe13g01331 270 ProSiteProfiles Zinc finger C2H2 type domain profile. 111 138 IPR013087 -
Bpe13g01331 270 SMART c2h2final6 196 216 IPR013087 -
Bpe13g01331 270 SMART c2h2final6 159 191 IPR013087 -
Bpe13g01331 270 SMART c2h2final6 111 133 IPR013087 -
Bpe13g01331 270 SUPERFAMILY beta-beta-alpha zinc fingers 182 216 IPR036236 -
Bpe13g01331 270 PANTHER ZINC FINGER PROTEIN WIP2 5 269 IPR043584 GO:0003700|GO:0010468
Bpe13g01331 270 Gene3D Classic Zinc Finger 110 133 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe06g00633 Bpe-Chr6:17106550 Bpe13g01331 Bpe-Chr13:18557497 5.25E-94 dispersed
Bpe10g00553 Bpe-Chr10:12575854 Bpe13g01331 Bpe-Chr13:18557497 7.21E-95 dispersed
Bpe13g01331 Bpe-Chr13:18557497 Bpe11g00832 Bpe-Chr11:6202693 1.33E-22 dispersed
Bpe13g01331 Bpe-Chr13:18557497 Bpe02g00007 Bpe-Chr2:71469 1.16E-99 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22378 None None None None Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g01331 - - zju:107429479 408.683