Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g01332 ATGAATTATTCGGAGAAAATGCAGGAAATGGCCATGGAGATGGATTTCAAAAAGTATGTGGAGGCGTTAAAGGAAGAACGCCGGAAAATTACTGTTTTCCAGCGCGAGCTGCCGCTCTGTTTAGAGCTTATCACTCAAGCGATCGAGTCTTGTACGCAGCAGTTATCGGGGACGACGACGGAGTGTTTTAATGGAGGACTATCTGATTGCTCCGAGCAAACTTCCGGTGAATGCCCAGTGCTGGAGGAATTTATTCCGGTCAAAAAAGGTTTATCTTCAGAATTTTTGGATGAAGAGAGAGAATCTCTAAAAATGAGAAACGAGAACAAAAATAGCGAGAAGAAGCAAGTGGGTCAATCTGATTGGCTTAAATCTGCTCAGCTATGGAATCCAGATCCAGACGTTAAGGAGGATTTACCGAAGAAGACGACGGTTGTGGAGGTGAAGAAAAATGGCGGAGCTTTCCAGCCATTCCACAGAGAAAAAACCACCGGAAAAACAAACTCGCCCGTCGAAAATGGGCCGGCGGCGACTTTAATTTGTACGGCGGAAACAGCTTTCCAAAGCAGCACAAGACGAGAAGAGAAAGACGAACAGGGTAAAAGAAAGCTCCGGCGGTGCTGGTCGCCGGAGTTGCATCGCCGATTCTTGAGTGCCCTTCAACAGCTCGGCGGCTCACATGTGGCGACACCAAAGCAGATTAGGGAGCTAATGAAAGTGGATGGTCTGACTAACGATGAAGTTAAAAGCCATTTACAGAAATATCGTTTGCACACTAGAAGGTCAAGTCCTGTACACAACAATGGCGTCAAACAGTCACCGCAATATGTGGTAGTGGGTGGAATATGGGTGCCGCCGTCAGAATACTCAGTGGCGCCGGCGACATCCGTTGCCGGAGATGGCAACGAAGTCTACGTAGTTCCAACCACAGTTTCACAAGGTGGCCAAGGGTCGGCCATTAAAAGGCCACAGCCAAAGCGATTGGTTCAGTCTAGCACGGAAGGAAGAAGGATCAGCCACGGCGGAGAAGACGGGATAGAAGGCGGTCGTCATTCTAATTCTCCGGCGACGTCGTCTTCCACTCACACTTCCACAGCTTCCCCTGGGCTTTGA 1113 48.97 MNYSEKMQEMAMEMDFKKYVEALKEERRKITVFQRELPLCLELITQAIESCTQQLSGTTTECFNGGLSDCSEQTSGECPVLEEFIPVKKGLSSEFLDEERESLKMRNENKNSEKKQVGQSDWLKSAQLWNPDPDVKEDLPKKTTVVEVKKNGGAFQPFHREKTTGKTNSPVENGPAATLICTAETAFQSSTRREEKDEQGKRKLRRCWSPELHRRFLSALQQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRSSPVHNNGVKQSPQYVVVGGIWVPPSEYSVAPATSVAGDGNEVYVVPTTVSQGGQGSAIKRPQPKRLVQSSTEGRRISHGGEDGIEGGRHSNSPATSSSTHTSTASPGL 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 18565463 18566904 + Bpe010994.1 Bpe13g01332 114112

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g01332 370 Coils Coil 93 113 - -
Bpe13g01332 370 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 200 260 IPR017930 -
Bpe13g01332 370 MobiDBLite consensus disorder prediction 102 117 - -
Bpe13g01332 370 PANTHER TRANSCRIPTION FACTOR HHO2 15 365 - -
Bpe13g01332 370 MobiDBLite consensus disorder prediction 102 139 - -
Bpe13g01332 370 MobiDBLite consensus disorder prediction 351 370 - -
Bpe13g01332 370 Pfam Myb-like DNA-binding domain 205 256 IPR001005 -
Bpe13g01332 370 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 15 365 IPR044787 GO:0003700|GO:0006355
Bpe13g01332 370 SUPERFAMILY Homeodomain-like 201 261 IPR009057 -
Bpe13g01332 370 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 203 258 IPR006447 GO:0003677
Bpe13g01332 370 MobiDBLite consensus disorder prediction 312 336 - -
Bpe13g01332 370 MobiDBLite consensus disorder prediction 312 370 - -
Bpe13g01332 370 Gene3D - 202 260 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g01332 - - - vvi:100257723 377.867
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe02g02281 Bpe13g01332 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe13g01076 Bpe-Chr13:16340578 Bpe13g01332 Bpe-Chr13:18565463 4.82E-59 dispersed
Bpe13g01332 Bpe-Chr13:18565463 Bpe04g01103 Bpe-Chr4:8822631 1.39E-14 dispersed
Bpe13g01332 Bpe-Chr13:18565463 Bpe02g02281 Bpe-Chr2:23606081 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g270 Blo01g00489 Blo16g01054 Bda01g02090 . Bpe13g01332 . Bma14g01699 . . Cmo18g01059 . Cma18g01041 . Car18g00967 Sed06g1866 Cpe09g00276 . Bhi07g01367 Tan04g0896 Cmetu10g0277 Lac13g0461 Hepe01g1219 . . Cla05g02327 Cam05g2500 Cec05g2524 Cco05g2566 Clacu05g2494 Cmu05g2357 Cre05g2473 Cone13ag0852 Cone19ag0853 Cone6ag0464 Cone9ag0476 Lsi04g00286 Csa05g02583 Chy10g01118 Cme10g00288 . Blo11g00832 Bda07g01528 . . Bpe02g02281 . Bma06g00768 . . . . . . Car15g00854 Cpe13g00409 . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe13g00855 . 12 312 G2-like Transcription Factor Family AT3G24120 55.7 5.1e-77 284.6
Bpe14g00844 . 6 268 G2-like Transcription Factor Family AT3G24120 55.6 1.1e-66 250.4
Bpe07g00477 CCT 20 184 G2-like Transcription Factor Family AT3G24120 57.7 2.4e-42 169.5
Bpe15g00926 CCT 23 174 G2-like Transcription Factor Family AT3G24120 59.7 2.6e-41 166.0
Bpe12g00030 . 14 169 G2-like Transcription Factor Family AT3G24120 56.6 1.2e-38 157.1
Bpe01g00053 . 18 148 G2-like Transcription Factor Family AT3G24120 61.9 1.8e-37 153.3
Bpe02g02281 CCT 2 243 G2-like Transcription Factor Family AT1G25550 54.1 2.8e-61 232.3
Bpe13g01332 CCT 1 253 G2-like Transcription Factor Family AT1G25550 52.9 6.9e-60 227.6
Bpe13g01332 CCT 1 295 G2-like Transcription Factor Family AT1G13300 50.2 2.0e-61 233.0
Bpe08g00093 . 1 269 G2-like Transcription Factor Family AT3G46640 51.1 1.3e-62 236.9
Bpe02g00025 . 1 306 G2-like Transcription Factor Family AT5G05090 53.6 2.0e-72 269.2
Bpe04g00533 . 1 309 G2-like Transcription Factor Family AT5G05090 51.7 5.4e-70 261.2
Bpe13g00855 . 12 312 G2-like Transcription Factor Family AT4G13640 53.5 6.0e-62 234.6
Bpe14g00844 . 6 293 G2-like Transcription Factor Family AT4G13640 54.4 1.1e-55 213.8
Bpe13g00855 . 12 312 G2-like Transcription Factor Family AT3G24120 55.7 5.1e-77 284.6
Bpe14g00844 . 6 268 G2-like Transcription Factor Family AT3G24120 55.6 1.1e-66 250.4
Bpe07g00477 CCT 20 184 G2-like Transcription Factor Family AT3G24120 57.7 2.4e-42 169.5
Bpe15g00926 CCT 23 174 G2-like Transcription Factor Family AT3G24120 59.7 2.6e-41 166.0
Bpe12g00030 . 14 169 G2-like Transcription Factor Family AT3G24120 56.6 1.2e-38 157.1
Bpe01g00053 . 18 148 G2-like Transcription Factor Family AT3G24120 61.9 1.8e-37 153.3
Bpe11g01644 . 1 191 G2-like Transcription Factor Family AT1G69580 50.3 1.3e-41 167.2
Bpe15g00926 CCT 1 279 G2-like Transcription Factor Family AT1G79430 54.4 4.2e-70 261.9
Bpe07g00477 CCT 1 274 G2-like Transcription Factor Family AT1G79430 58.5 4.1e-65 245.4
Bpe12g00030 . 1 221 G2-like Transcription Factor Family AT1G79430 55.9 7.0e-57 218.0
Bpe13g00855 . 36 201 G2-like Transcription Factor Family AT1G79430 61.3 4.6e-40 162.2
Bpe08g00040 . 66 302 G2-like Transcription Factor Family AT2G01060 54.4 7.4e-55 210.7
Bpe02g00025 . 1 306 G2-like Transcription Factor Family AT3G10760 65.1 4.7e-95 344.7
Bpe04g00533 . 1 309 G2-like Transcription Factor Family AT3G10760 63.2 3.1e-91 332.0
Bpe02g00025 . 1 208 G2-like Transcription Factor Family AT2G40970 63.6 5.4e-64 241.1
Bpe04g00533 . 1 208 G2-like Transcription Factor Family AT2G40970 62.4 1.2e-60 229.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004323 2 1 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22379 PF00249 Myb_DNA-binding 1.40E-06 CL0123 Bpe TF