Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g01336 ATGGCAATGCGTCATCCAAGAAGATTTGTCCTGTCTGGCTGCCTGTCTGCTCTGATTGTGATGACCATTCTTTCCGCGCTTATGGGTTGGGCTGCTCCGAATTTGATCTCACGTAAATGGACTCATCACATAACAACCCTTTTGTTCTTTGGATTTGGTCTATGGTCTTTGTGGGATGCATTTACTAATGATGGGGAATCTGAAGAATTTGCTGAAGTTGAAGCAAAGCTGGATGCTGATTTGAAGGCAAACAAGAAAACTACGAAAGACAGTAGTAAGGATGGTGATGAGTTGAAAAAGCAGAGTCGACCTTTTCTTTCGTCATTATTCTCCCCCATCTTCTTGAAGGCATTTTCCATCACATTTTTTGGTGAATGGGGTGACAAGAGCCAGCTGGCAACCATAGGCTTAGCAGCAGATGAGAATCCAGTAGGTGTAGTACTTGGTGGAATCATAGGACAAGCAATGTGTACTGTTGCCGCTGTACTTGGGGGAAGGAGCTTGGCATCTCAGATATCTGAGAAAATAGTCGCACTCTCTGGTGGAATTCTTTTCATTGTTTTTGGAATTCAATCCTACCTTTCAGTTATTGAGTAA 597 43.05 MAMRHPRRFVLSGCLSALIVMTILSALMGWAAPNLISRKWTHHITTLLFFGFGLWSLWDAFTNDGESEEFAEVEAKLDADLKANKKTTKDSSKDGDELKKQSRPFLSSLFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPVGVVLGGIIGQAMCTVAAVLGGRSLASQISEKIVALSGGILFIVFGIQSYLSVIE 198
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 18614288 18624453 - Bpe010998.1 Bpe13g01336 114116

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g01336 198 PANTHER GDT1 FAMILY PROTEIN 1 196 - -
Bpe13g01336 198 PANTHER TRANSMEMBRANE PROTEIN HTP-1 RELATED 1 196 IPR001727 -
Bpe13g01336 198 Pfam Uncharacterized protein family UPF0016 1 53 IPR001727 -
Bpe13g01336 198 Pfam Uncharacterized protein family UPF0016 116 189 IPR001727 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g01336 K23541 TMEM165, GDT1; Ca2+/H+ antiporter, TMEM165/GDT1 family - twl:120012805 318.161
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe09g00684 Bpe-Chr9:15422054 Bpe13g01336 Bpe-Chr13:18614288 2.45E-48 dispersed
Bpe11g00647 Bpe-Chr11:4984657 Bpe13g01336 Bpe-Chr13:18614288 1.92E-16 dispersed
Bpe13g01336 Bpe-Chr13:18614288 Bpe11g01274 Bpe-Chr11:9536996 9.29E-22 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g276 . Blo16g01056 . Bda11g01139 Bpe13g01336 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0461 Cone9ag0473 . . . . . . . Bda11g01139 . . . Bma06g00766 . . . . . . Car15g00851 Cpe13g00410 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006913 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 36