Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g01353 CTTATCACTGCATTCGCTGGGTTTAAGAAAATGGCGGATGCCCGCCGATTGTTCGATCATGTTCCCTATCCAGGTGTTTCTCTGTGGAATGCCATGTTCAGGGGCTACCTCGAGAACGAGATCTTCAGGGATGTAGTCTTTTTGTTTGGAAAAATGAAGAACATTGACGTAGCGCCGAACTGCTTTACATTCCCCATCGTTATCAAATCTTGTGGAAAAATCAGGGCATTAATCGAAGGTGAGGAAGTCCATTGTCTAGTTCTCAAGAGTGGTTTTACATCAAACCAGTTTATAGCTACTACTTTGATTGATATGTATGCGATCGCAGGAATGATTAAATCAGCTTATAAGGTGTTCACTGAGATGCTTGATAGAAATGTTTTCGCCTGGACTTCAATGATTAATGGCTTCATATTCTGTTCTGACATGGTTTCTGCTCGTCGTCTTTTTGATTTGGCTCCTGAACGAGACATTGTTCTGTGGAATACGATGATTTCAGGATACATAGAAAGAAAGAACATGACAGAAGCATGTAAGTTGTTCGATGAAATGCCGAGTAGAGATGTAATGTGTTGGAACACGATGTTGAACGGCTTAGGAAATAATGGCAAAATCGACGCTTGCGAGAGGCTGTTCGAGGAGATGCCGGAGAGAAATATTTTCTCATGGAATGGAATGATCGGAGGGTATGCGCATAACGGACAATATTTTGACGCATTGGAGTGCTTTCAACGAATGTTGCTAGAGGGTAATGTGATGCCTAATCATGCCACTTTAGTTGCCGTGTTGTCCGCCTGTGCGAGATTAGGAGCGCTTGATTTGGGCAAATGGGTCCACGTATATGCAAATAATGCTGGGTTTAGAGGAAATGTTTTTGTCGGAAATGCGCTTATCGACATGTATGCAAAATGTGGGACTGTAGAAAATTCAGTTGTTGTGTTCAAGAACATGAAAACCAAAGATTTAATCACTTGGAACTCTCTTATTTGTGGCTTGGCGATGCATGGACGTGGAGCTGATGCATTATCTGTATTTAAGGAGATGAAGATCGAAGGAGAAAAGCCTGACACGATCACCTTTGTCGGTATTTTGTGTGCTTGTACACATCTCGGATTAGTGGAAGAAGGAATTTCATATTTTCAATCTATGATTGATGAGTACTCAATTGTGCCTCAAATTGAGCATTACGGGTGTATAGTTGATTTGTTGGGCAAAGCCGGACTCTTAGCTAAGGCGATCGAATTTGTCAGAAACATGCCTATCGAAGCCGATGCCGTTATTTGGGCCTCCGTTCTCAGCACCAGCCGAATTTACAAAAACATCGAAGTGGCCGAACTAGCGATTCAACATCTCGTTCAGTTCGAACCTAAAAACCCGGCAAATTATGTCGAGCTTTCGAATGTTTACGGGCATCTAGGGAGATGGAAAGATGTTGCGCGATTCAAAGTGGCGATGCGAGATACTGGATTCAAAAAAGTACCAGGTTGTAGTTTGATCGAGATTGGTAACCATGTGGTTGAGTTCTATTCCTCGGATGAAAGGCTTTGCGAAAACGAGGAGATTTATGAAGCCTTAAAGGGGTTGACAAAGTTGTTAAGATCTTTTGCGGGTTATGTACCGGATATTGGCGAGTTATGTAGCTTGGATCATAGAGAAGAGGGGGACACTCAGTCGTGA 1677 42.64 LITAFAGFKKMADARRLFDHVPYPGVSLWNAMFRGYLENEIFRDVVFLFGKMKNIDVAPNCFTFPIVIKSCGKIRALIEGEEVHCLVLKSGFTSNQFIATTLIDMYAIAGMIKSAYKVFTEMLDRNVFAWTSMINGFIFCSDMVSARRLFDLAPERDIVLWNTMISGYIERKNMTEACKLFDEMPSRDVMCWNTMLNGLGNNGKIDACERLFEEMPERNIFSWNGMIGGYAHNGQYFDALECFQRMLLEGNVMPNHATLVAVLSACARLGALDLGKWVHVYANNAGFRGNVFVGNALIDMYAKCGTVENSVVVFKNMKTKDLITWNSLICGLAMHGRGADALSVFKEMKIEGEKPDTITFVGILCACTHLGLVEEGISYFQSMIDEYSIVPQIEHYGCIVDLLGKAGLLAKAIEFVRNMPIEADAVIWASVLSTSRIYKNIEVAELAIQHLVQFEPKNPANYVELSNVYGHLGRWKDVARFKVAMRDTGFKKVPGCSLIEIGNHVVEFYSSDERLCENEEIYEALKGLTKLLRSFAGYVPDIGELCSLDHREEGDTQS 558
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 18795027 18796703 + Bpe011015.1 Bpe13g01353 114133

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g01353 558 Gene3D Tetratricopeptide repeat domain 280 351 IPR011990 GO:0005515
Bpe13g01353 558 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 217 531 - -
Bpe13g01353 558 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 25 184 - -
Bpe13g01353 558 Pfam PPR repeat family 24 72 IPR002885 -
Bpe13g01353 558 Pfam PPR repeat family 320 367 IPR002885 -
Bpe13g01353 558 Pfam PPR repeat family 157 189 IPR002885 -
Bpe13g01353 558 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 188 222 IPR002885 -
Bpe13g01353 558 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 157 187 IPR002885 -
Bpe13g01353 558 Gene3D Tetratricopeptide repeat domain 352 525 IPR011990 GO:0005515
Bpe13g01353 558 Gene3D Tetratricopeptide repeat domain 1 125 IPR011990 GO:0005515
Bpe13g01353 558 Pfam PPR repeat 191 220 IPR002885 -
Bpe13g01353 558 Pfam PPR repeat 129 155 IPR002885 -
Bpe13g01353 558 Pfam PPR repeat 221 250 IPR002885 -
Bpe13g01353 558 Pfam PPR repeat 100 127 IPR002885 -
Bpe13g01353 558 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 25 184 - -
Bpe13g01353 558 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 217 531 - -
Bpe13g01353 558 Pfam E motif 438 500 IPR046848 -
Bpe13g01353 558 TIGRFAM PPR: pentatricopeptide repeat domain 323 357 IPR002885 -
Bpe13g01353 558 TIGRFAM PPR: pentatricopeptide repeat domain 191 220 IPR002885 -
Bpe13g01353 558 TIGRFAM PPR: pentatricopeptide repeat domain 159 188 IPR002885 -
Bpe13g01353 558 TIGRFAM PPR: pentatricopeptide repeat domain 221 252 IPR002885 -
Bpe13g01353 558 TIGRFAM PPR: pentatricopeptide repeat domain 100 127 IPR002885 -
Bpe13g01353 558 Gene3D Tetratricopeptide repeat domain 188 279 IPR011990 GO:0005515
Bpe13g01353 558 Gene3D Tetratricopeptide repeat domain 126 187 IPR011990 GO:0005515
Bpe13g01353 558 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 95 129 IPR002885 -
Bpe13g01353 558 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 321 355 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g01353 - - - mcha:111010545 793.497
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00907 Bpe-Chr3:28803689 Bpe13g01353 Bpe-Chr13:18795027 2.41E-16 dispersed
Bpe13g01353 Bpe-Chr13:18795027 Bpe01g00489 Bpe-Chr1:3108510 7.77E-38 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g318 . . . Bda11g01155 Bpe13g01353 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01155 . . . Bma06g00752 . . Cmo15g00949 . Cma15g00911 . Car15g00855 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013696 1 1 0 1 1 1 1 1 0 1 1 1 1 2 0 1 0 0 0 1 1 1 1 0 1 1 1 1 1 1 24