Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g01358 ATGGGAAAGAGTGATGCAAATTCCTTGGAAGTCCTGGAGGGTATCATGGAAGATTTGACGAAAGTGGAATTGGACTTGGCATATTTGTCCGAGAAGTTGGTAAATTACCACGTACTTTTGATGTGCCTGTTGACCCAGGAGCGGGATTTCGAATCGTTGATTTCTGAAGACGATTATATTTTGGACGATTCGATAGAGAAGGCGTTGGCTTTTGATCTCTTATCTGGGTTTTTAGATTTGGAGGTTAAAGAATTGGACTATTTTATGGATACCCTCCATGCAGAAATAAAAAATGCTCGTCATAAAATATCTTCTTGCAGACACCCAAGGGAGGTTGTCACTGCTTTGGAAGACAAATTGCTTGATTCTGAAGCATCTTTGAAGCAATCCCGGCAACAGATTTTGGAAGTTACAATGCAATCGACGAAGTTGCAGAGAATCGTTTTAGCTCTCAGAGATGGAAATGGTAAATTTAACGAGGATTTGGATATATCCGATAATATTTTTGCGTGTAACATAAACGGAACATCGGATCGAAGGATGAACGAACAATATCGACATGTTCTAAGGATGCTGGAAAAATCTCTATCCAGGGAGCTAGATCTCGAGAAAGAATTATCGGAATCGAGAAAAAGAGAAGAGGAAATGAGATTGAAGCTACACTATACAGAACAAGTAGCATTGCGAATGGAAGAAGCTGCCGAAGTCGTATGGGGTCGGTTTTTAGAGGTCGATAACAGAGCCGAGGTTCTCATGGGAATTTCAACGGAATTAGTTGGTCGAATCCAGATCGTTCAATTCAATTTGAACTGTTTGATTCATCGAGAACACGAGATGAATGCCAAATTTCAAGATTATGAAGAACAGCTGAAAGAAAAGGGTCTTGCTTTGCAAAGACTTGAGGCCAGCAAAGTAGAGAACAATACCAATAGTGTTGAACTTGCAAGAAAAGAGGTGAAATCTCTCGAAAAACAGCTCGAAGAAACGAAAAATCTTCTCAAAATTGCAAATTCCTCTAACTTGGAGAGCCAGGAACAACTTATCGAAATGGAAAATCTCGTTGATTCTCTTAAAGAAAGTCTCGTAATAGAGGAAGGTCGAGCCGAAAATGCAGAGATGAAACTCGTGCAGTTGACTGAGTCAAACTCAGAAATCGCGGAAGAGCTGAATTTTCTGAAAGACAGCGCGACGAATGAAGAAAAGAAGGTGGGTTCATTAGAGAAACAGCTGAGAGAAGTAGAGCTTCAATTGCAGCATGCAAAGGCATCCATGGAAGTCAGTCAGGAGCAACAAAACATGTTATATAATGCCATTTGGGACATGGAAACACTTATTGAAGATCTAAAGTCGAAGGCTTCGAAGGCTGAAAGTAAAACCGACAACGTAGAGGAGCAATGCATTATATTATCTGAATCTAACATAGAACTTAATAAAGAAGTGGATTCCTTAAAGGCTAGAGTAGAATTCTTGGAGACATCCTTGGATAAAGCAAACAATGAAAAATATGAAAATTCAAAGGAGATTGGGTTGAGAAGCAAGTATATCATGGATTTGGTGATGAAACTCGCTATTGAAAGGGAGCGGATCGAGAAACAGGTAATGAATTCGTGTTTCATTGCAAATAACCCGAAATTAGTATGCTTCAATTTGTGTTTTATCCGCTAG 1665 39.52 MGKSDANSLEVLEGIMEDLTKVELDLAYLSEKLVNYHVLLMCLLTQERDFESLISEDDYILDDSIEKALAFDLLSGFLDLEVKELDYFMDTLHAEIKNARHKISSCRHPREVVTALEDKLLDSEASLKQSRQQILEVTMQSTKLQRIVLALRDGNGKFNEDLDISDNIFACNINGTSDRRMNEQYRHVLRMLEKSLSRELDLEKELSESRKREEEMRLKLHYTEQVALRMEEAAEVVWGRFLEVDNRAEVLMGISTELVGRIQIVQFNLNCLIHREHEMNAKFQDYEEQLKEKGLALQRLEASKVENNTNSVELARKEVKSLEKQLEETKNLLKIANSSNLESQEQLIEMENLVDSLKESLVIEEGRAENAEMKLVQLTESNSEIAEELNFLKDSATNEEKKVGSLEKQLREVELQLQHAKASMEVSQEQQNMLYNAIWDMETLIEDLKSKASKAESKTDNVEEQCIILSESNIELNKEVDSLKARVEFLETSLDKANNEKYENSKEIGLRSKYIMDLVMKLAIERERIEKQVMNSCFIANNPKLVCFNLCFIR 554
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 18827405 18829452 - Bpe011020.1 Bpe13g01358 114138

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g01358 554 Coils Coil 305 430 - -
Bpe13g01358 554 SUPERFAMILY Tropomyosin 303 527 - -
Bpe13g01358 554 Gene3D - 336 485 - -
Bpe13g01358 554 Coils Coil 473 500 - -
Bpe13g01358 554 PANTHER WPP DOMAIN-INTERACTING TAIL-ANCHORED PROTEIN 1 4 534 IPR039976 -
Bpe13g01358 554 Coils Coil 438 465 - -
Bpe13g01358 554 Coils Coil 283 303 - -
Bpe13g01358 554 PANTHER WPP DOMAIN-INTERACTING TAIL-ANCHORED PROTEIN 2 4 534 - -
Bpe13g01358 554 Coils Coil 113 133 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g01358 - - - cmo:103503596 623.624
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe13g01358 Bpe-Chr13:18827405 Bpe14g00132 Bpe-Chr14:1771226 1.46E-104 dispersed
Bpe13g01358 Bpe-Chr13:18827405 Bpe02g01420 Bpe-Chr2:17669694 9.63E-26 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1011 . Blo16g01071 . Bda11g01160 Bpe13g01358 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone9ag0511 . . . . . . . Bda11g01160 . . . Bma06g00749 . . Cmo15g00878 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006325 1 1 1 1 1 1 2 1 1 1 1 1 2 1 2 2 1 2 2 1 1 1 1 1 1 1 1 1 3 1 38