Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g01362 ATGGGTTCTGCAACTTCTTCAATGGCTGCAAAGTTTGCGTTTTTTCCTCCAGACCCACCAACATACGCCATTAACGCAGAAGAAACCTCGGGGAAGATAATGATTTCAAACGTGAATCAGAGAGAAAACGTCGACGTATTACGACTGAGCACCAAGAGAGGGAATGAGATTGTAGCCATGTTCGTGAGGAATCCATTAGCTTCACTGACTGTGCTTTATTCCCATGGAAATGCAGCTGATCTTGGTCAAATTTATCACCTTTTCACTCAACTTAGTCTCCATCTCAATGTCAATCTGATGGGGTACGATTATTCTGGGTATGGACAGTCTTCTGGAAAGGTAATGAGCTCAAGCTTTTACAGTTCTGAAAAACTAGCCATTTTTTTTTCTCTTTTCATTAAACTCACGATAAGTTTGAGTTACAAAACTCGTATTAGTTTTCATAATGTGTTATCTCCTTTGGCTTTGGTTTTTTTCTTAAAACCAAGTGAGCAGGACACATATGCTGACATAGAAGCTGCATTTAGATGCCTAGAAGAGAAATATGGTGTGAAGGAAGAAGACATTGTATTGTATGGACAATCGGTTGGAAGTGGACCGACATTGGAAATGGCGACTCAATTGCCTCGTTTGAGAGCTGTTGTTCTTCACAGTCCGATTCTGTCTGGACTTCGTGTCATGTCTTCTGTGAAGAGAACATTCTGGTTTGACATTTACAAGAATATCGATAAAATTACACTGATTGATTGCCCTGTTCTCGTAATTCATCAACGGGTCGTATATACTCGACACTTAGTTTTTAATGAAACCCACTTTCCACTATTTCAAAGTCCTTCCCTACTCCTTTGGCCCTATAATCACTGTCAATTTATGATGTTGGATGCAACAGAGTATCGTATCATACTTAGAGCGTTTCAGTACTGTCTCGAAATCATAGAAAAAATATTTGATATTTCATCGATAATCAATATGCTATCAAGCAGTCACCAAAACATCAAGGATGCATCACTACAGTTATTACTTGAACTTTCAAAAGCCGTGTCGATGTGTGAAAAAATTGGATCAATAACCGGAGGAATTCTTAGACTTCTCACAATAAAGTATAGTCAGTCAACTGATACCTCTATTTCAGGAAAAGTAGATCAAATTTTGAAGAATCTCGAGAGCTATCAGCCGAACATCAGGTGTATGGCAGAATATGGCCACTTAGAACCTCTCTTGACCCACCTTGCTGAAGGTATTGAGGAGACTAAAATAGAAATGGCAAGCTACCTTGGATATATTGTTCTTGGGGATGGCAAACAAATCGACGTGGCAAAGAAAGCGGCTCCGACTTTAGTCAGCATGGTGAAAAGTGGAAATGCAGTTAGCAGAAAGGCAGCATTCAAGGCATTAATACAGATTTCATCTTACCAATTTAATGGAAAAATACTAGCTGAATCTGGAACAATACAAGCCATGGCTGAAGAGCTATTCAATCAGACAATCTCTGATGAGCCAATGAAATCAAAAGTGGAAGCAGCTGTGATTCTTGCAAATATACTCGAATCGGCAATTGAGCTTGAGAATTGGCAAATTGATACTCATGGCAACACTTTAAATTCAGATTATGTGGTGTATAACATCATATACTTGCTGAGGAACTCGTCTCCGGATGAACTCAAACTTAGCCTTGTCAGAATTCTTTTGTGTCTGAAAAAGCATCCAAAGTTAATGGATGCCATTGTTTTTCGAGTGAAGGACAGTGAAGCTGGCTATACTATGATTGAATTCATCAATAACCTACATGAAGAACTTGGAATTGGAGCAATGAAGCTGCTCATTTCTCTCTGCCCTTTCATAGGCCATAGCTTAGCAGAAAGACTGTGCAATATGAGGGACCAACTGGAGAATCTAATTCAAAACCTCACCAGAGAATCGCAAATAAGCGAAAAGCAGGCACTTTCTGCAAAATTTCTTGCAACACTTCCCCACCAGAACTTGACTCTCAATCTTGCCCTTGTGGAGAAGAATGTAGTCCCTGTAATCCTGCAAACGATCAATCAAATCCAAAGAAGTGAAACAAGAACAAGTAGGTATTCCAGTGCTTACTTAGAGGGATTAGTTGGGGTTATAGTCAGATTTACTACTACTTTATATGAACCCCAGTTATTGTTTCTTGCAAGAACCCACAATTTCACGTCGTTTTTCAGTGAATTGCTCATGAAAACATCGAGCGAAGAAGTTCAAAAGTTATCTGCAATTGGATTAGGGAATCTCTCATCAGCCACAATCAGTCTACTAAAAGTGCCGGAAACGGCAACAATCAAGGGAAAGAAGCTATCTTACTTGCACAAAGCACTATCTTATGGGTCATCAAAAAGAAACAAAATGAAGAGCAAAATACCTGTCTGTCCAGTTCATAGAGGCGCCTGCTCATCGCAGAATACATTCTGCTTAATTGATGCAAATGCAGTAGAGAGATTGTTGGATTCTCTAGACAATGAGAATGAAGAAGTGATCGAAGCTTCTCTGTCAGCACTTTGCACCTTGTTGGACGAAAAAGTGGATGTTTTTGAGAGTGTGAATATGTTATGCAGTTATAATGCTATGAAACATGTACTTAATGTGGTAAAAGAACACAAGCAAGAAGCTTTATGGCAGAAATCTCTCTGGGTAATAGAGAGATTTCTGTTGAAAGGTGGAGATAAGTCTGCTTCAGACATTTCGCAGGACAAATTGTTTCCTACTGCATTGATTAGTGCTTTTCATCATGGAGATGATCATACAAGGGAAATGGCTGAGAGGATAATGAGTCTTATGAACATGATGCCCAAGTTCTCTGTCACAGACTAA 2835 39.33 MGSATSSMAAKFAFFPPDPPTYAINAEETSGKIMISNVNQRENVDVLRLSTKRGNEIVAMFVRNPLASLTVLYSHGNAADLGQIYHLFTQLSLHLNVNLMGYDYSGYGQSSGKVMSSSFYSSEKLAIFFSLFIKLTISLSYKTRISFHNVLSPLALVFFLKPSEQDTYADIEAAFRCLEEKYGVKEEDIVLYGQSVGSGPTLEMATQLPRLRAVVLHSPILSGLRVMSSVKRTFWFDIYKNIDKITLIDCPVLVIHQRVVYTRHLVFNETHFPLFQSPSLLLWPYNHCQFMMLDATEYRIILRAFQYCLEIIEKIFDISSIINMLSSSHQNIKDASLQLLLELSKAVSMCEKIGSITGGILRLLTIKYSQSTDTSISGKVDQILKNLESYQPNIRCMAEYGHLEPLLTHLAEGIEETKIEMASYLGYIVLGDGKQIDVAKKAAPTLVSMVKSGNAVSRKAAFKALIQISSYQFNGKILAESGTIQAMAEELFNQTISDEPMKSKVEAAVILANILESAIELENWQIDTHGNTLNSDYVVYNIIYLLRNSSPDELKLSLVRILLCLKKHPKLMDAIVFRVKDSEAGYTMIEFINNLHEELGIGAMKLLISLCPFIGHSLAERLCNMRDQLENLIQNLTRESQISEKQALSAKFLATLPHQNLTLNLALVEKNVVPVILQTINQIQRSETRTSRYSSAYLEGLVGVIVRFTTTLYEPQLLFLARTHNFTSFFSELLMKTSSEEVQKLSAIGLGNLSSATISLLKVPETATIKGKKLSYLHKALSYGSSKRNKMKSKIPVCPVHRGACSSQNTFCLIDANAVERLLDSLDNENEEVIEASLSALCTLLDEKVDVFESVNMLCSYNAMKHVLNVVKEHKQEALWQKSLWVIERFLLKGGDKSASDISQDKLFPTALISAFHHGDDHTREMAERIMSLMNMMPKFSVTD 944
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 18852945 18866371 - Bpe011024.1 Bpe13g01362 114142

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g01362 944 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 42-RELATED 310 942 - -
Bpe13g01362 944 SUPERFAMILY ARM repeat 377 932 IPR016024 -
Bpe13g01362 944 Coils Coil 619 646 - -
Bpe13g01362 944 Gene3D - 437 611 IPR011989 -
Bpe13g01362 944 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 310 942 - -
Bpe13g01362 944 Pfam Armadillo/beta-catenin-like repeat 806 844 IPR000225 GO:0005515
Bpe13g01362 944 Gene3D - 716 936 IPR011989 -
Bpe13g01362 944 SMART arm_5 806 846 IPR000225 GO:0005515
Bpe13g01362 944 SMART arm_5 714 755 IPR000225 GO:0005515
Bpe13g01362 944 SMART arm_5 390 430 IPR000225 GO:0005515
Bpe13g01362 944 Coils Coil 816 836 - -
Bpe13g01362 944 Gene3D alpha/beta hydrolase 36 281 IPR029058 -
Bpe13g01362 944 Gene3D - 317 436 IPR011989 -
Bpe13g01362 944 SUPERFAMILY alpha/beta-Hydrolases 46 256 IPR029058 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g01362 - - - jre:108989404 777.319
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01758 Bpe-Chr2:19917990 Bpe13g01362 Bpe-Chr13:18852945 2.04E-108 dispersed
Bpe09g00527 Bpe-Chr9:14045730 Bpe13g01362 Bpe-Chr13:18852945 3.09E-96 dispersed
Bpe12g00679 Bpe-Chr12:12410661 Bpe13g01362 Bpe-Chr13:18852945 7.41E-100 dispersed
Bpe14g00104 Bpe-Chr14:1505841 Bpe13g01362 Bpe-Chr13:18852945 1.42E-41 dispersed
Bpe15g01394 Bpe-Chr15:21838377 Bpe13g01362 Bpe-Chr13:18852945 2.05E-21 dispersed
Bpe13g01362 Bpe-Chr13:18852945 Bpe02g01423 Bpe-Chr2:17682360 1.17E-97 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1007 . Blo16g01073 . Bda11g01163 Bpe13g01362 . . . . Cmo18g01102 . Cma18g01080 . Car18g01002 Sed08g1853 Cpe09g00244 . Bhi07g01438 Tan04g0950 Cmetu03g1218 Lac13g0414 Hepe10g1828 . . Cla05g02371 Cam05g2539 Cec05g2569 Cco05g2608 Clacu05g2536 Cmu05g2395 Cre05g2512 . . . . Lsi04g00332 Csa05g02538 Chy10g01080 . . . . Bda11g01163 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe14g00159 . 1 1046 U-box Gene Family AT5G15400 73.3 0.0e+00 1511.9
Bpe06g00419 . 1 781 U-box Gene Family AT3G54790 52.5 2.2e-129 459.9
Bpe06g00004 BCT 195 823 U-box Gene Family AT2G23140 61.5 1.6e-104 377.1
Bpe15g00315 BCT 192 739 U-box Gene Family AT2G23140 52.3 3.0e-66 250.0
Bpe13g01504 . 1 756 U-box Gene Family AT1G24330 58.0 1.5e-237 819.3
Bpe10g00785 . 1 769 U-box Gene Family AT1G24330 54.5 8.7e-214 740.3
Bpe13g01504 . 1 758 U-box Gene Family AT1G67530 57.1 1.2e-231 799.7
Bpe10g00785 . 1 768 U-box Gene Family AT1G67530 54.1 1.8e-206 716.1
Bpe01g00378 . 1 365 U-box Gene Family AT4G21350 59.5 3.7e-117 418.3
Bpe02g01924 . 1 360 U-box Gene Family AT4G21350 61.3 5.9e-115 411.0
Bpe09g00300 . 134 457 U-box Gene Family AT3G07360 52.6 1.6e-84 309.7
Bpe06g00548 . 134 457 U-box Gene Family AT3G07360 61.2 5.2e-83 304.7
Bpe10g00477 . 134 457 U-box Gene Family AT3G07360 54.9 5.5e-77 284.6
Bpe11g01609 CCT 240 464 U-box Gene Family AT1G71020 55.8 5.7e-62 235.3
Bpe11g00764 CCT 254 421 U-box Gene Family AT1G71020 56.6 7.5e-46 181.8
Bpe08g01367 CCT 227 419 U-box Gene Family AT1G71020 50.5 8.3e-45 178.3
Bpe11g01609 CCT 1 668 U-box Gene Family AT1G23030 54.4 4.8e-106 382.1
Bpe11g00764 CCT 89 632 U-box Gene Family AT2G28830 58.3 8.1e-103 371.3
Bpe08g01367 CCT 89 629 U-box Gene Family AT2G28830 57.2 7.1e-99 358.2
Bpe11g00764 CCT 1 630 U-box Gene Family AT3G46510 68.1 4.9e-157 551.6
Bpe08g01367 CCT 1 629 U-box Gene Family AT3G46510 64.2 2.0e-142 503.1
Bpe11g00764 CCT 8 621 U-box Gene Family AT3G54850 54.5 4.6e-104 375.6
Bpe02g01755 . 34 643 U-box Gene Family AT5G42340 66.1 1.9e-140 496.5
Bpe11g01122 . 1 714 U-box Gene Family AT1G29340 64.4 2.6e-228 788.5
Bpe04g01488 . 1 393 U-box Gene Family AT3G52450 56.7 6.0e-127 451.1
Bpe03g01192 . 1 393 U-box Gene Family AT3G52450 53.4 1.6e-119 426.4
Bpe04g01488 . 1 392 U-box Gene Family AT2G35930 55.8 5.0e-123 438.0
Bpe03g01192 . 1 392 U-box Gene Family AT2G35930 53.5 3.3e-119 425.2
Bpe06g00274 . 1 396 U-box Gene Family AT5G64660 50.6 1.1e-104 377.1
Bpe15g00290 . 1 448 U-box Gene Family AT3G49810 71.7 1.1e-179 626.3
Bpe13g00136 . 1 450 U-box Gene Family AT3G49810 70.1 1.9e-176 615.5
Bpe05g00017 . 1 450 U-box Gene Family AT3G49810 61.1 4.0e-150 528.1
Bpe15g00290 . 1 448 U-box Gene Family AT5G65920 67.8 3.5e-167 584.7
Bpe13g00136 . 1 450 U-box Gene Family AT5G65920 66.5 3.1e-163 571.6
Bpe05g00017 . 1 450 U-box Gene Family AT5G65920 61.6 1.5e-149 526.2
Bpe13g00949 . 30 876 U-box Gene Family AT2G45910 52.8 1.3e-234 809.7
Bpe02g01207 . 466 748 U-box Gene Family AT2G45910 50.2 4.6e-75 279.6
Bpe13g00261 . 28 503 U-box Gene Family AT5G40140 50.3 1.6e-60 230.7
Bpe13g01362 . 310 907 U-box Gene Family AT1G68940 54.2 5.5e-174 608.6
Bpe02g01758 CCT 4 813 U-box Gene Family AT1G76390 63.3 2.2e-276 948.3
Bpe02g00304 CCT 12 813 U-box Gene Family AT1G76390 60.4 1.9e-267 918.7
Bpe02g01758 CCT 7 813 U-box Gene Family AT1G20780 64.1 1.7e-284 975.3
Bpe02g00304 CCT 12 813 U-box Gene Family AT1G20780 60.2 1.3e-268 922.5
Bpe13g01504 . 1 758 U-box Gene Family AT1G27910 59.5 4.1e-248 854.4
Bpe10g00785 . 1 771 U-box Gene Family AT1G27910 57.5 1.8e-235 812.4
Bpe10g00007 . 1 598 U-box Gene Family AT5G67530 75.0 1.8e-262 901.7
Bpe13g00911 . 16 164 U-box Gene Family AT5G67530 52.9 1.1e-43 174.9
Bpe13g00538 CCT 1 523 U-box Gene Family AT1G04510 73.3 3.7e-224 774.2
Bpe14g01276 CCT 2 521 U-box Gene Family AT1G04510 72.4 4.5e-222 767.3
Bpe13g00538 CCT 1 487 U-box Gene Family AT2G33340 73.1 9.7e-211 729.6
Bpe14g01276 CCT 2 485 U-box Gene Family AT2G33340 72.7 4.5e-208 720.7
Bpe03g00897 . 10 279 U-box Gene Family AT3G07370 66.3 9.2e-105 376.7
Bpe09g00301 . 7 277 U-box Gene Family AT3G07370 59.8 2.3e-92 335.5
Bpe14g00159 . 1 1046 U-box Gene Family AT5G15400 73.3 0.0e+00 1511.9
Bpe06g00419 . 1 781 U-box Gene Family AT3G54790 52.5 2.2e-129 459.9
Bpe06g00004 BCT 195 823 U-box Gene Family AT2G23140 61.5 1.6e-104 377.1
Bpe15g00315 BCT 192 739 U-box Gene Family AT2G23140 52.3 3.0e-66 250.0
Bpe13g01504 . 1 756 U-box Gene Family AT1G24330 58.0 1.5e-237 819.3
Bpe10g00785 . 1 769 U-box Gene Family AT1G24330 54.5 8.7e-214 740.3
Bpe13g01504 . 1 758 U-box Gene Family AT1G67530 57.1 1.2e-231 799.7
Bpe10g00785 . 1 768 U-box Gene Family AT1G67530 54.1 1.8e-206 716.1
Bpe01g00378 . 1 365 U-box Gene Family AT4G21350 59.5 3.7e-117 418.3
Bpe02g01924 . 1 360 U-box Gene Family AT4G21350 61.3 5.9e-115 411.0
Bpe09g00300 . 134 457 U-box Gene Family AT3G07360 52.6 1.6e-84 309.7
Bpe06g00548 . 134 457 U-box Gene Family AT3G07360 61.2 5.2e-83 304.7
Bpe10g00477 . 134 457 U-box Gene Family AT3G07360 54.9 5.5e-77 284.6
Bpe11g01609 CCT 240 464 U-box Gene Family AT1G71020 55.8 5.7e-62 235.3
Bpe11g00764 CCT 254 421 U-box Gene Family AT1G71020 56.6 7.5e-46 181.8
Bpe08g01367 CCT 227 419 U-box Gene Family AT1G71020 50.5 8.3e-45 178.3
Bpe11g01609 CCT 1 668 U-box Gene Family AT1G23030 54.4 4.8e-106 382.1
Bpe11g00764 CCT 89 632 U-box Gene Family AT2G28830 58.3 8.1e-103 371.3
Bpe08g01367 CCT 89 629 U-box Gene Family AT2G28830 57.2 7.1e-99 358.2
Bpe11g00764 CCT 1 630 U-box Gene Family AT3G46510 68.1 4.9e-157 551.6
Bpe08g01367 CCT 1 629 U-box Gene Family AT3G46510 64.2 2.0e-142 503.1
Bpe11g00764 CCT 8 621 U-box Gene Family AT3G54850 54.5 4.6e-104 375.6
Bpe02g01755 . 34 643 U-box Gene Family AT5G42340 66.1 1.9e-140 496.5
Bpe11g01122 . 1 714 U-box Gene Family AT1G29340 64.4 2.6e-228 788.5
Bpe04g01488 . 1 393 U-box Gene Family AT3G52450 56.7 6.0e-127 451.1
Bpe03g01192 . 1 393 U-box Gene Family AT3G52450 53.4 1.6e-119 426.4
Bpe04g01488 . 1 392 U-box Gene Family AT2G35930 55.8 5.0e-123 438.0
Bpe03g01192 . 1 392 U-box Gene Family AT2G35930 53.5 3.3e-119 425.2
Bpe06g00274 . 1 396 U-box Gene Family AT5G64660 50.6 1.1e-104 377.1
Bpe15g00290 . 1 448 U-box Gene Family AT3G49810 71.7 1.1e-179 626.3
Bpe13g00136 . 1 450 U-box Gene Family AT3G49810 70.1 1.9e-176 615.5
Bpe05g00017 . 1 450 U-box Gene Family AT3G49810 61.1 4.0e-150 528.1
Bpe15g00290 . 1 448 U-box Gene Family AT5G65920 67.8 3.5e-167 584.7
Bpe13g00136 . 1 450 U-box Gene Family AT5G65920 66.5 3.1e-163 571.6
Bpe05g00017 . 1 450 U-box Gene Family AT5G65920 61.6 1.5e-149 526.2
Bpe13g00949 . 30 876 U-box Gene Family AT2G45910 52.8 1.3e-234 809.7
Bpe02g01207 . 466 748 U-box Gene Family AT2G45910 50.2 4.6e-75 279.6
Bpe13g00261 . 28 503 U-box Gene Family AT5G40140 50.3 1.6e-60 230.7
Bpe13g01362 . 310 907 U-box Gene Family AT1G68940 54.2 5.5e-174 608.6
Bpe02g01758 CCT 4 813 U-box Gene Family AT1G76390 63.3 2.2e-276 948.3
Bpe02g00304 CCT 12 813 U-box Gene Family AT1G76390 60.4 1.9e-267 918.7
Bpe02g01758 CCT 7 813 U-box Gene Family AT1G20780 64.1 1.7e-284 975.3
Bpe02g00304 CCT 12 813 U-box Gene Family AT1G20780 60.2 1.3e-268 922.5
Bpe13g01504 . 1 758 U-box Gene Family AT1G27910 59.5 4.1e-248 854.4
Bpe10g00785 . 1 771 U-box Gene Family AT1G27910 57.5 1.8e-235 812.4
Bpe10g00007 . 1 598 U-box Gene Family AT5G67530 75.0 1.8e-262 901.7
Bpe13g00911 . 16 164 U-box Gene Family AT5G67530 52.9 1.1e-43 174.9
Bpe13g00538 CCT 1 523 U-box Gene Family AT1G04510 73.3 3.7e-224 774.2
Bpe14g01276 CCT 2 521 U-box Gene Family AT1G04510 72.4 4.5e-222 767.3
Bpe13g00538 CCT 1 487 U-box Gene Family AT2G33340 73.1 9.7e-211 729.6
Bpe14g01276 CCT 2 485 U-box Gene Family AT2G33340 72.7 4.5e-208 720.7
Bpe03g00897 . 10 279 U-box Gene Family AT3G07370 66.3 9.2e-105 376.7
Bpe09g00301 . 7 277 U-box Gene Family AT3G07370 59.8 2.3e-92 335.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012245 1 1 1 0 1 1 1 1 1 1 1 1 1 1 2 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 29