Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g01365 ATGGCGGAAGCTTCGGTTAAACCGACACCCCTTTTGAAAGATGAGCTGGACATCGTAATCCCCACGATTAGAAACCTGGATTTCTTAGAGATGTGGAGGCCCTTTTTTCAACCGTACCATCTCATAATCGTACAGGATGGTGACCCTTCGAAAATTATCAATGTCCCAGATGGCTTCGACTTCGAGCTCTACAATCGGAACGACATCAATCGGATTTTGGGTCCGAAGGCATCTTGCATTTCGTTCAAAGACTCTGCTTGTCGCTGCTTTGGCTATTTGATTTCTAAGAAGAAGTATATCTACACCATTGATGATGATTGCTTTGTCGCTAAAGATCCAACTGGGAAAGATATCAATGCTCTTGAGCAGCATATAAAGAATCTCTTATGTCCATCTACTCCGTTTTTCTTCAACACTCTTTACGATCCGTATCGAGAGGGTGCGGACTTTGTCCGTGGATATCCTTTCAGTCTTCGAGAGGGTATTCCTACTGCCGTTTCTCACGGACTCTGGCTGAACATCCCCGATTATGACGCTCCCACCCAACTCGTCAAACCACGCGAGAGAAACACGAGGTACGTTGATGCAGTCTTGTCGATTCCTAAGGGAACTCTATTCCCCATGTGTGGAATGAATCTGGCTTTCGATCGAGAGCTTATTGGACCGGCTATGTACTTTGGACTCATGGGCGATGGTCAACCAATTGGGCGATACGATGACATGTGGGCTGGCTGGTGTGTGAAGGTTATTTGTGACCATCTCGGGTTGGGGGTGAAGACTGGTTTGCCATACATATGGCACAGCAAAGCAAGCAATCCATTTGTGAACCTTAAGAAGGAGTATAAAGGAATCTTCTGGCAAGAAGAAATCATCCCCTTCTTTCAGTCTGCAATCCTTCCGAAAGACTGCACTACAGTTGAGAAATGCTATATCGAGCTCTCAAAGCTGGTGAAGGAGAAGCTCGGAAAGCTCGATCCTTACTTTGGCAAGCTTGCAGACGCCATGGTTACTTGGATTGAAGCTTGGGATGAGCTCAATAACAGTTCTTCTACCCAGAAATCTGCAAAACAACTCCCTGCCAAGTAG 1086 46.04 MAEASVKPTPLLKDELDIVIPTIRNLDFLEMWRPFFQPYHLIIVQDGDPSKIINVPDGFDFELYNRNDINRILGPKASCISFKDSACRCFGYLISKKKYIYTIDDDCFVAKDPTGKDINALEQHIKNLLCPSTPFFFNTLYDPYREGADFVRGYPFSLREGIPTAVSHGLWLNIPDYDAPTQLVKPRERNTRYVDAVLSIPKGTLFPMCGMNLAFDRELIGPAMYFGLMGDGQPIGRYDDMWAGWCVKVICDHLGLGVKTGLPYIWHSKASNPFVNLKKEYKGIFWQEEIIPFFQSAILPKDCTTVEKCYIELSKLVKEKLGKLDPYFGKLADAMVTWIEAWDELNNSSSTQKSAKQLPAK 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 18884890 18887443 + Bpe011026.1 Bpe13g01365 114145

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g01365 361 PIRSF UPTG 6 350 IPR004901 GO:0016866|GO:0071669
Bpe13g01365 361 SUPERFAMILY Nucleotide-diphospho-sugar transferases 16 222 IPR029044 -
Bpe13g01365 361 Pfam Reversibly glycosylated polypeptide 12 346 IPR037595 -
Bpe13g01365 361 PANTHER UDP-ARABINOSE MUTASE 3 355 IPR037595 -
Bpe13g01365 361 PANTHER UDP-ARABINOPYRANOSE MUTASE 3 3 355 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g01365 K13379 RGP, UTM; reversibly glycosylated polypeptide / UDP-arabinopyranose mutase [EC:2.4.1.- 5.4.99.30] - qsu:112009791 693.73
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe02g02309 Bpe13g01365 CCT
Bpe02g02309 Bpe13g01365 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe13g01365 Bpe-Chr13:18884890 Bpe14g00139 Bpe-Chr14:1874317 0 dispersed
Bpe02g02309 Bpe-Chr2:23769864 Bpe13g01365 Bpe-Chr13:18884890 0 transposed
Bpe13g01365 Bpe-Chr13:18884890 Bpe02g01430 Bpe-Chr2:17719158 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g14 Blo01g00460 . . Bda11g01166 Bpe13g01365 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01166 . Bpe02g02309 Bma01g00129 . . . . . . . . . Cpe07g00091 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000316 4 5 5 5 5 4 7 4 4 4 3 4 7 4 4 6 4 7 7 4 4 4 4 4 4 4 4 7 4 4 140