Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g01366 GTTATGACCTCAGAGGAGAAGGCTACAATGGAGATCGTTCCACCTTCTGAACATCTCTGCTATGTCCGATGCAACTTCTGCAACACTATTCTTGCGGTTGGGATTCCATGCAAACGTTTGCTGGATACAGTGACAGTGAAGTGCGGCCATTGCAGCAACCTTTCTTTTCTGAGCACTAGACCTCCATTACAAGGCCAATGCTTTGATCATCCATTGTCTCTTCAGACGCAGGTATTTTGCAAAGGCCAGCCTTCATCATCGCCCTCTTCCTCGTCCAGTGAGCCATTATCGCCCAAAGCTCCATTTGTGGTCAAACCTCCTGAGAAGAAACACAGAATTCCATCTGCATACAATCGTTTCATGAAAGAGGAAATACAGCGTCTAAAGGCAGCCAACCCTGAAATACCTCATCGAGAAGCATTCAGCAAAGCAGCAAAAAGTTGGGCGAGGTACATTCCAAACGCACCAGGAGGATCAAGCTCTGCTGGAATGAGCAACAATGTAAGTTAA 510 46.67 VMTSEEKATMEIVPPSEHLCYVRCNFCNTILAVGIPCKRLLDTVTVKCGHCSNLSFLSTRPPLQGQCFDHPLSLQTQVFCKGQPSSSPSSSSSEPLSPKAPFVVKPPEKKHRIPSAYNRFMKEEIQRLKAANPEIPHREAFSKAAKSWARYIPNAPGGSSSAGMSNNVS 169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 18891140 18892626 + Bpe011027.1 Bpe13g01366 114146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g01366 169 Gene3D High mobility group box domain 92 154 IPR036910 -
Bpe13g01366 169 MobiDBLite consensus disorder prediction 80 97 - -
Bpe13g01366 169 PANTHER PROTEIN YABBY 6-RELATED 8 162 IPR006780 GO:0007275
Bpe13g01366 169 MobiDBLite consensus disorder prediction 80 109 - -
Bpe13g01366 169 PANTHER PROTEIN CRABS CLAW 8 162 - -
Bpe13g01366 169 Pfam YABBY protein 15 151 IPR006780 GO:0007275
Bpe13g01366 169 SUPERFAMILY HMG-box 95 149 IPR036910 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00159 Bpe-Chr7:1098565 Bpe13g01366 Bpe-Chr13:18891140 1.07E-38 dispersed
Bpe13g01366 Bpe-Chr13:18891140 Bpe01g00747 Bpe-Chr1:6729826 1.87E-40 dispersed
Bpe13g01366 Bpe-Chr13:18891140 Bpe11g00259 Bpe-Chr11:1881777 1.24E-42 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22383 PF04690 YABBY 8.80E-47 CL0114 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g01366 K25796 - vvi:100261225 280.411