Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g01368 ATGGGGAGAGGTAGGGTTCAGCTGAAAAGAATAGAAAATAAAATCAATCGGCAAGTTACTTTTTCAAAAAGGAAAGCTGGGTTGTTGAAGAAAGCTCATGAAATCTCTGTACTTTGCGACGCTGAGGTTGCTTTGATCGTCTTCTCTAACAAAGGAAAGCTCTTTGAATACGCTACAGATTCTAGTATGGAGATGATACTGGAACGATATGAGAGATATTCCTGTGCAGAGAGGCAGCTATATGCAACTCAATCTGAGTCACCGGGGAACTGGGTCATTGAGTATTCAAGGCTAAAAGCTAAGATTGAGCTTTTAGAGAGAAAATACAGGCACTATCTGGGTGAAGATCTTAACTCGTTGAGTCTGAAAGAGCTTCAGAGTTTGGAGCAACAGCTTGAGACTGCTCTTAAACATATTCGATCAAAAAAAGTAGGGTTAAATAAACAATTAGTGTTCTAA 459 39.43 MGRGRVQLKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALIVFSNKGKLFEYATDSSMEMILERYERYSCAERQLYATQSESPGNWVIEYSRLKAKIELLERKYRHYLGEDLNSLSLKELQSLEQQLETALKHIRSKKVGLNKQLVF 152
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 18936151 18939565 + Bpe011029.1 Bpe13g01368 114148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g01368 152 Gene3D - 13 87 IPR036879 GO:0003677|GO:0046983
Bpe13g01368 152 Pfam K-box region 86 145 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bpe13g01368 152 ProSiteProfiles K-box domain profile. 88 152 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bpe13g01368 152 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A 1 143 - -
Bpe13g01368 152 CDD MADS_MEF2_like 2 74 IPR033896 GO:0000977|GO:0045944
Bpe13g01368 152 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bpe13g01368 152 Coils Coil 122 142 - -
Bpe13g01368 152 Coils Coil 95 115 - -
Bpe13g01368 152 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bpe13g01368 152 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 143 - -
Bpe13g01368 152 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bpe13g01368 152 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bpe13g01368 152 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bpe13g01368 152 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bpe13g01368 152 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bpe13g01368 152 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe10g00914 Bpe-Chr10:14781063 Bpe13g01368 Bpe-Chr13:18936151 2.95E-80 dispersed
Bpe11g01669 Bpe-Chr11:12879739 Bpe13g01368 Bpe-Chr13:18936151 2.94E-72 dispersed
Bpe13g01368 Bpe-Chr13:18936151 Bpe15g00567 Bpe-Chr15:16678416 1.09E-57 dispersed
Bpe14g00307 Bpe-Chr14:3060186 Bpe13g01368 Bpe-Chr13:18936151 9.00E-40 dispersed
Bpe13g01368 Bpe-Chr13:18936151 Bpe02g02307 Bpe-Chr2:23754926 2.94E-93 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22384 PF01486 K-box 3.40E-20 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g01368 K09264 - qsu:112022353 224.172