Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g01369 ATGAGAACTGGGAAATCCAATCGGGAAGAAGACGAGTTCGAGGAGGAAGAGTTCATTTCCAAAAAAGAAGGCCCTTCTTCGTCTTCTATTGCCAACATTAATAGCAATAGCAAAGAGGTGAAGAACAACGATAAAGCTAATGCAATCCGGTCTAAGCATTCTGTTACAGAGCAACGAAGAAGAAGCAAGATCAATGAGAGGTTCCAAATGTTGAGAGATCTCATACCTCATAGTGATCAAAAGAGGGATACAGCATCTTTCCTACTCGAATTAACTACTACTAATATTCATTTGCAGGTGATTGAGTATGTTCGGTATTTACAAGAAAAAGTGCAGAAGTATGAAGGTTCGTATCAGAGCTGGAGCGGGGAGCCTACCAAATTAATGCCATGGAGAAATAGTCATTGGCGGGCCCAAAGTTTTGCCAGTTCAGTTCCGGGATTAACTTTTCCGGGTAAATTTGATGAAACCCAAAACTTGGAGGATTCACTTGCAAATAGGGACCTTGTTCGACAAGGCGATGGAGCAAACATAGGGACCCCTTTGCAAGTTCCTTTGCAGGTTAGCATTCCGTCTTCTGTACGAAACGATGGCACTCTTGCTCGTCCTCTTCAAGCTCCGGGTTCTAATGTGCACTCAACTGAGTGTCTAGACCCATCTGAGACTTTAAACCAGACTGAGGAGGTGACTATCGAAGGCGGAACTATAAGTATCTCGAGTTTATACTCAGAAGGCTTATTGAACACTTTGACACAAGCACTCAAGGGTGCTGGAGTGGATCTGTCTCAGGCCAGTATCTCTATTCAGATAGACATCGGAAAAAGAGCAGGCGGGACATCGGCCTTGAAGGATCATGAGAGTAATGAAGAAACAATGCATACAAAGGACAGAGGCAGTGCAGAGGACTCAAATCAAGCCGTAAAAAGGTTAAAAACGTAA 939 43.56 MRTGKSNREEDEFEEEEFISKKEGPSSSSIANINSNSKEVKNNDKANAIRSKHSVTEQRRRSKINERFQMLRDLIPHSDQKRDTASFLLELTTTNIHLQVIEYVRYLQEKVQKYEGSYQSWSGEPTKLMPWRNSHWRAQSFASSVPGLTFPGKFDETQNLEDSLANRDLVRQGDGANIGTPLQVPLQVSIPSSVRNDGTLARPLQAPGSNVHSTECLDPSETLNQTEEVTIEGGTISISSLYSEGLLNTLTQALKGAGVDLSQASISIQIDIGKRAGGTSALKDHESNEETMHTKDRGSAEDSNQAVKRLKT 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 18949327 18952113 - Bpe011030.1 Bpe13g01369 114149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g01369 312 PANTHER TRANSCRIPTION FACTOR BIM2 1 312 - -
Bpe13g01369 312 MobiDBLite consensus disorder prediction 279 312 - -
Bpe13g01369 312 SMART finulus 54 113 IPR011598 GO:0046983
Bpe13g01369 312 MobiDBLite consensus disorder prediction 1 63 - -
Bpe13g01369 312 MobiDBLite consensus disorder prediction 43 63 - -
Bpe13g01369 312 MobiDBLite consensus disorder prediction 23 42 - -
Bpe13g01369 312 Gene3D - 46 127 IPR036638 GO:0046983
Bpe13g01369 312 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 48 107 IPR011598 GO:0046983
Bpe13g01369 312 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 1 312 IPR044295 GO:0003700|GO:0006351|GO:0046983
Bpe13g01369 312 Pfam Helix-loop-helix DNA-binding domain 50 108 IPR011598 GO:0046983
Bpe13g01369 312 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 46 129 IPR036638 GO:0046983
Bpe13g01369 312 CDD bHLH_AtBIM_like 47 132 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00745 Bpe-Chr7:13981120 Bpe13g01369 Bpe-Chr13:18949327 5.80E-54 dispersed
Bpe11g00039 Bpe-Chr11:277454 Bpe13g01369 Bpe-Chr13:18949327 2.33E-52 dispersed
Bpe13g01369 Bpe-Chr13:18949327 Bpe03g00724 Bpe-Chr3:27356221 1.42E-07 dispersed
Bpe13g01369 Bpe-Chr13:18949327 Bpe02g02304 Bpe-Chr2:23736165 2.89E-124 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22385 PF00010 HLH 4.20E-09 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g01369 - - qsu:112028766 347.821