Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g01372 ATGGCATCTGAAATGGTTTATCCATTTCCCCTTCCAGAGAACGTGGGCAGTAATTTTGTGGAGCAGCATTATAACATTCTTCATTACTTTCCCGAGGAGGCTTACAAATTCTATAAGGATTCTAGTGTTCTTACTCGACCTGGTCCAGATGGAAAGATGATGACGGTGACCGCCATGCAAGGAATCAATGACATGATACTCTCTCTGGACTACAAGAACCGCGACTTTGAAATATCGACGATTGATACTCAGCATTCATTTAATGGTGGGGTGGTTATCATGGTGACTGGTTATTTAACTGGGAAAGACAACATTAAAAGGATGTTTTCCCAAGTGTTCTTTCTAGCTCCACAAGAAACCGGTTTGTTCGTCTTGAATGACATCTTCAACTATTTCGATCAATGTGCTGACGGCAGTGTTGATGCTGGCAATGTTGTAGAAAGTGCTCCGGAATCTCCGAAGACACCAGATCCTGAAAATGAAAACCCTCCATTGGTAGAAGATGCTGAGGGGGGGCAGACCACTGGTCATCTACTGGAAAATAGAAAAGAATCAACTGATGAAATTGGTCTTGTTAGAGAAGATCCGGTCGTGGTTAAGAGTGAGGAGATTCCAGCTGCCACAGAGACAGCTGCTCCGACCATTTTGGAGGATGCCCCGAAAAAATCTTTTGCAACTTTGGTCAATGCTCTGAATGATAATGCTACTCCATTTCAGAGGGTTTCACCTCCCAAGCCTGCAGGAAAGCCACAAATTCCTTCAGCACCCAAATTATCGTCTCAGAAAATCGGGGCTGTTGTCAACAAGACTAATATGCCCGCAGTCAATGCTCATGCTATCTTTGTTCCAAACTTGCCCATGAGTGCTACTGTTGAAGAACTTGAAAAGCTATTTATGAAGTTTGGTTCCATCAAACGTAATGGCATTCAAGTTAGGAGTAAGCAGTATCAGGGATCCTGCTTTGGGTTTGTGGAGTTTGAATCAGGAACATCAATGCAAAATGCGCTCAAGGCTTCCCCTATCTTGTTTTGCAACCGAAAACTTTTCATCGAAGAAAGACGAGCTGTAAGCAAAGACGGAGGGAGATATTCATCAGGCAATGGCGGCTACAGAAACAATAACTATAAGCCTCGGGGGAATTTTAGCAATGGGCAGGGCAATGGACAGCCTCAGGGTCGAGAGTTCGTCGGTCGATCGCAAGGAAATATTGTACAAAACGGAGAAGCTAATACTCCGAGGTTTCAATGA 1248 43.99 MASEMVYPFPLPENVGSNFVEQHYNILHYFPEEAYKFYKDSSVLTRPGPDGKMMTVTAMQGINDMILSLDYKNRDFEISTIDTQHSFNGGVVIMVTGYLTGKDNIKRMFSQVFFLAPQETGLFVLNDIFNYFDQCADGSVDAGNVVESAPESPKTPDPENENPPLVEDAEGGQTTGHLLENRKESTDEIGLVREDPVVVKSEEIPAATETAAPTILEDAPKKSFATLVNALNDNATPFQRVSPPKPAGKPQIPSAPKLSSQKIGAVVNKTNMPAVNAHAIFVPNLPMSATVEELEKLFMKFGSIKRNGIQVRSKQYQGSCFGFVEFESGTSMQNALKASPILFCNRKLFIEERRAVSKDGGRYSSGNGGYRNNNYKPRGNFSNGQGNGQPQGREFVGRSQGNIVQNGEANTPRFQ 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 18967612 18969962 + Bpe011032.1 Bpe13g01372 114152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g01372 415 Pfam Nuclear transport factor 2 (NTF2) domain 15 131 IPR002075 -
Bpe13g01372 415 SMART rrm1_1 279 351 IPR000504 GO:0003723
Bpe13g01372 415 MobiDBLite consensus disorder prediction 360 415 - -
Bpe13g01372 415 MobiDBLite consensus disorder prediction 142 194 - -
Bpe13g01372 415 MobiDBLite consensus disorder prediction 180 194 - -
Bpe13g01372 415 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 8 402 IPR039539 -
Bpe13g01372 415 Gene3D - 4 136 - -
Bpe13g01372 415 CDD RRM_SF 280 351 - -
Bpe13g01372 415 SUPERFAMILY RNA-binding domain, RBD 275 384 IPR035979 GO:0003676
Bpe13g01372 415 MobiDBLite consensus disorder prediction 366 415 - -
Bpe13g01372 415 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 280 338 IPR000504 GO:0003723
Bpe13g01372 415 MobiDBLite consensus disorder prediction 236 257 - -
Bpe13g01372 415 Gene3D - 260 398 IPR012677 -
Bpe13g01372 415 CDD NTF2 12 131 IPR018222 -
Bpe13g01372 415 ProSiteProfiles Nuclear transport factor 2 domain profile. 15 131 IPR018222 -
Bpe13g01372 415 SUPERFAMILY NTF2-like 13 131 IPR032710 -
Bpe13g01372 415 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 278 355 IPR000504 GO:0003723
Bpe13g01372 415 PANTHER BNAA02G14660D PROTEIN 8 402 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe13g00326 Bpe-Chr13:11111064 Bpe13g01372 Bpe-Chr13:18967612 1.15E-86 dispersed
Bpe13g01372 Bpe-Chr13:18967612 Bpe15g00576 Bpe-Chr15:16751612 1.09E-52 dispersed
Bpe13g01372 Bpe-Chr13:18967612 Bpe07g00754 Bpe-Chr7:14073664 2.53E-89 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g01372 K24983 - zju:107429041 343.199