Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g01372 ATGGCATCTGAAATGGTTTATCCATTTCCCCTTCCAGAGAACGTGGGCAGTAATTTTGTGGAGCAGCATTATAACATTCTTCATTACTTTCCCGAGGAGGCTTACAAATTCTATAAGGATTCTAGTGTTCTTACTCGACCTGGTCCAGATGGAAAGATGATGACGGTGACCGCCATGCAAGGAATCAATGACATGATACTCTCTCTGGACTACAAGAACCGCGACTTTGAAATATCGACGATTGATACTCAGCATTCATTTAATGGTGGGGTGGTTATCATGGTGACTGGTTATTTAACTGGGAAAGACAACATTAAAAGGATGTTTTCCCAAGTGTTCTTTCTAGCTCCACAAGAAACCGGTTTGTTCGTCTTGAATGACATCTTCAACTATTTCGATCAATGTGCTGACGGCAGTGTTGATGCTGGCAATGTTGTAGAAAGTGCTCCGGAATCTCCGAAGACACCAGATCCTGAAAATGAAAACCCTCCATTGGTAGAAGATGCTGAGGGGGGGCAGACCACTGGTCATCTACTGGAAAATAGAAAAGAATCAACTGATGAAATTGGTCTTGTTAGAGAAGATCCGGTCGTGGTTAAGAGTGAGGAGATTCCAGCTGCCACAGAGACAGCTGCTCCGACCATTTTGGAGGATGCCCCGAAAAAATCTTTTGCAACTTTGGTCAATGCTCTGAATGATAATGCTACTCCATTTCAGAGGGTTTCACCTCCCAAGCCTGCAGGAAAGCCACAAATTCCTTCAGCACCCAAATTATCGTCTCAGAAAATCGGGGCTGTTGTCAACAAGACTAATATGCCCGCAGTCAATGCTCATGCTATCTTTGTTCCAAACTTGCCCATGAGTGCTACTGTTGAAGAACTTGAAAAGCTATTTATGAAGTTTGGTTCCATCAAACGTAATGGCATTCAAGTTAGGAGTAAGCAGTATCAGGGATCCTGCTTTGGGTTTGTGGAGTTTGAATCAGGAACATCAATGCAAAATGCGCTCAAGGCTTCCCCTATCTTGTTTTGCAACCGAAAACTTTTCATCGAAGAAAGACGAGCTGTAAGCAAAGACGGAGGGAGATATTCATCAGGCAATGGCGGCTACAGAAACAATAACTATAAGCCTCGGGGGAATTTTAGCAATGGGCAGGGCAATGGACAGCCTCAGGGTCGAGAGTTCGTCGGTCGATCGCAAGGAAATATTGTACAAAACGGAGAAGCTAATACTCCGAGGTTTCAATGA 1248 43.99 MASEMVYPFPLPENVGSNFVEQHYNILHYFPEEAYKFYKDSSVLTRPGPDGKMMTVTAMQGINDMILSLDYKNRDFEISTIDTQHSFNGGVVIMVTGYLTGKDNIKRMFSQVFFLAPQETGLFVLNDIFNYFDQCADGSVDAGNVVESAPESPKTPDPENENPPLVEDAEGGQTTGHLLENRKESTDEIGLVREDPVVVKSEEIPAATETAAPTILEDAPKKSFATLVNALNDNATPFQRVSPPKPAGKPQIPSAPKLSSQKIGAVVNKTNMPAVNAHAIFVPNLPMSATVEELEKLFMKFGSIKRNGIQVRSKQYQGSCFGFVEFESGTSMQNALKASPILFCNRKLFIEERRAVSKDGGRYSSGNGGYRNNNYKPRGNFSNGQGNGQPQGREFVGRSQGNIVQNGEANTPRFQ 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 18967612 18969962 + Bpe011032.1 Bpe13g01372 114152

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g01372 415 Pfam Nuclear transport factor 2 (NTF2) domain 15 131 IPR002075 -
Bpe13g01372 415 SMART rrm1_1 279 351 IPR000504 GO:0003723
Bpe13g01372 415 MobiDBLite consensus disorder prediction 360 415 - -
Bpe13g01372 415 MobiDBLite consensus disorder prediction 142 194 - -
Bpe13g01372 415 MobiDBLite consensus disorder prediction 180 194 - -
Bpe13g01372 415 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 8 402 IPR039539 -
Bpe13g01372 415 Gene3D - 4 136 - -
Bpe13g01372 415 CDD RRM_SF 280 351 - -
Bpe13g01372 415 SUPERFAMILY RNA-binding domain, RBD 275 384 IPR035979 GO:0003676
Bpe13g01372 415 MobiDBLite consensus disorder prediction 366 415 - -
Bpe13g01372 415 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 280 338 IPR000504 GO:0003723
Bpe13g01372 415 MobiDBLite consensus disorder prediction 236 257 - -
Bpe13g01372 415 Gene3D - 260 398 IPR012677 -
Bpe13g01372 415 CDD NTF2 12 131 IPR018222 -
Bpe13g01372 415 ProSiteProfiles Nuclear transport factor 2 domain profile. 15 131 IPR018222 -
Bpe13g01372 415 SUPERFAMILY NTF2-like 13 131 IPR032710 -
Bpe13g01372 415 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 278 355 IPR000504 GO:0003723
Bpe13g01372 415 PANTHER BNAA02G14660D PROTEIN 8 402 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g01372 K24983 G3BP2; Ras GTPase-activating protein-binding protein 2 - zju:107429041 343.199
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe13g00326 Bpe-Chr13:11111064 Bpe13g01372 Bpe-Chr13:18967612 1.15E-86 dispersed
Bpe13g01372 Bpe-Chr13:18967612 Bpe15g00576 Bpe-Chr15:16751612 1.09E-52 dispersed
Bpe13g01372 Bpe-Chr13:18967612 Bpe07g00754 Bpe-Chr7:14073664 2.53E-89 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g31 . Blo16g01084 Bda01g02126 . Bpe13g01372 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0524 . . . . . . . . . . . . Bma06g00740 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0018106 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 5