Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g01375 ATGGGATCAAAAAATGTGCTCACAGATTTGGTATTGGAAGAATGGAATGGTTCTTCTTCTACGAAGCTTTCTAGAACAGCCACCATAACTGCCGCTCCTCGCCTCACCATCGAAAGGCGAGGCTTTCCTAGCAGTGTAACTCCGGATTATGTCCCTTTTCAAGTATGGGATTTGTTGCAGGGTCTCTCAACATACATAAGGACTATGCTTTCTACACAAGCTCTGTTGAGTGCCATTGGAGTTGGTGAGAAATCGGCGACTGTGATTGGTGCCACATTTCAGTGGTTTCTGAGGGATCTGACTGGAATGGTTGGAGGTATCTTATTCACATTCTATCAGGGATCAAATCTAGATAGTAATGCAAAAATGTGGCGTTTGGTTGCAGATCTTATGAATGATCTTGGGATGTTAATGGACCTACTCTCCCCATTATTTCCATCGGCATTCATACTCATTGTTTGCTTAGGCAGCCTGTCAAGATCATTCACTGGTGTTGCTAGTGGAGCTACCAGAGCTGCTTTAACACAGCATTTTGCCCTTCAGCATAACGCAGCAGATATATCTGCCAAGGAAGGAAGTCAAGAGACAGTAGCCACAATGATAGGAATGGCGTTGGGTATGCTTCTTGCGCATGTTACAGTGGGACATCCGCTGGCCATTTGGTTCTCTTTTTTGTTTCTCACCATGTTTCATATGTATGCGAACTACAAGGCTGTGCGGTGCGTTGCTTTGACTTCATTAAACCCAGAGCGAAGTTCAATTGCTTTACAGCATTTCATGGCGTCTGGTCAAGTTCTCTCTCCTGAAAAAGTCTCAAGGATGGAGCATGTATTACCCACATGGGCGGCCTTCTCATGGAGCTCCGAGAATGCAAAATTACTGCATGCTCGAGTTCAACTAGGCGTGAGGCTTACTTCTCTTGATCAATTGGAAATGATGGACTTGTTGCAGTCCACTGGTGCTCACTATAATAAAGCAAAGCATTTGCTGGTGGAGAGGAAGGAAGTTGTAGGCATTATTATGCATAAAGATTCAACCTCTGCGGATGTCTTGCACGCTTTTATTCATGCACTTGTTATGGCAAATCTTCCTGATACAAAAAACTCCAAGCATTTGGAGAGCAGAACATGGATGGATAAAAACTATGAAGTTTTTATTGAAAAGCTAAACTCGTCGGGTTGGAAAACAGAACGACTGCTCTCGCAATCGATTGTTTGGAGAGCAAACTGGTTATCTGGTTCTGTAGATGAGAAGATTGACTAA 1263 43.63 MGSKNVLTDLVLEEWNGSSSTKLSRTATITAAPRLTIERRGFPSSVTPDYVPFQVWDLLQGLSTYIRTMLSTQALLSAIGVGEKSATVIGATFQWFLRDLTGMVGGILFTFYQGSNLDSNAKMWRLVADLMNDLGMLMDLLSPLFPSAFILIVCLGSLSRSFTGVASGATRAALTQHFALQHNAADISAKEGSQETVATMIGMALGMLLAHVTVGHPLAIWFSFLFLTMFHMYANYKAVRCVALTSLNPERSSIALQHFMASGQVLSPEKVSRMEHVLPTWAAFSWSSENAKLLHARVQLGVRLTSLDQLEMMDLLQSTGAHYNKAKHLLVERKEVVGIIMHKDSTSADVLHAFIHALVMANLPDTKNSKHLESRTWMDKNYEVFIEKLNSSGWKTERLLSQSIVWRANWLSGSVDEKID 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 18989345 18995473 + Bpe011035.1 Bpe13g01375 114155

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g01375 420 PANTHER PROTEIN ROOT UVB SENSITIVE 3 7 420 - -
Bpe13g01375 420 Pfam Vitamin B6 photo-protection and homoeostasis 41 262 IPR006968 -
Bpe13g01375 420 PANTHER RUS1 FAMILY PROTEIN C16ORF58 7 420 IPR006968 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g01375 - - - jre:109014367 645.966
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe10g00370 Bpe-Chr10:11281161 Bpe13g01375 Bpe-Chr13:18989345 6.18E-35 dispersed
Bpe11g01171 Bpe-Chr11:8679803 Bpe13g01375 Bpe-Chr13:18989345 1.52E-26 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g40 . Blo16g01086 . Bda11g01177 Bpe13g01375 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0907 . . . . . . . . . . Bda11g01177 . . . Bma06g00738 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008878 1 4 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 0 1 1 1 1 1 33