Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g01378 ATGGTTGCTCTCTTCGTCGGCTTGAACTCTGCTCCGCCGGAGGCGAAATGGAGGTCTATGAAGCATCTGAGGGGGAGAGTTATGGCCAATGCGTTTCCCTCCTTCCTTCCCAAAGAAGTCGACAAAATCAAAGATCCTTTTGCTCGGAAGCTGGCGTCTAGGATTGAGAGGGTTCCGGTGAGCTTTTCTCAAAATTGTGTTATGACTAGTTGTGTGAGGCCATCGATAAAGAGTGAAACGAGTCCAGTGGTTCTACTCCATGGTTTTGACAGCTCCTGCTTAGAGTGGAGATATACACATCCATTGCTTGAGGAGGCTGGTTTGGAGACTTGGGCTGTTGACATTCTTGGATGGGGATTTTCTGATTTAGAAAGCCTTCCACCTGTTGATGTGACATCAAAGCGTGAACACTTTTATCAGCTTTGGAGTACCTACATTAAAAGGCCTATGTTATTGGTTGGACCAAGCCTCGGTGCTGCTGTTGCTATTGATTTTGCAGTCAAATATCCAGAGGCTGTTGAAATGCTTGTTTTGATAGATGCTAGTGTATATGCAGAAGGCACTGGAAACTTATCAACCTTACCGAGAGGGCTAGCATATGCCGGGGTGTCTTTGTTAAAGAGCATACCTCTGCGTCTCTATGTGAACGTGTTGGCATTCAATTCCATATCACTGAATACAAGCATTGATTGGATGAGAGTGGGTCGTTTACATTGCCTTCTACCTTGGTGGGAGGATACAACAGTGAATTTTATGATGAGCGGAGGTTATACTGTCAGCGGCTTGATAAAACAGGTAAAACAGAAGACGCTCGTCATATGGGGTGAGAATGATCAGATTATCAGCAACAAATTTGCAGTGAGATTGAACAGTGAGTTGCCAAATTCAATTCTTCGACAAGTACCCGAATGCGGCCACATTCCTCACGTGGAGAAGCCAAGCATCGTCGCCCGTTTTATCGCGGAGTTTGTTAGAGAAGAATCCACTAATAAAAAGGTTAAGCTTTTCTCATAG 1014 44.87 MVALFVGLNSAPPEAKWRSMKHLRGRVMANAFPSFLPKEVDKIKDPFARKLASRIERVPVSFSQNCVMTSCVRPSIKSETSPVVLLHGFDSSCLEWRYTHPLLEEAGLETWAVDILGWGFSDLESLPPVDVTSKREHFYQLWSTYIKRPMLLVGPSLGAAVAIDFAVKYPEAVEMLVLIDASVYAEGTGNLSTLPRGLAYAGVSLLKSIPLRLYVNVLAFNSISLNTSIDWMRVGRLHCLLPWWEDTTVNFMMSGGYTVSGLIKQVKQKTLVIWGENDQIISNKFAVRLNSELPNSILRQVPECGHIPHVEKPSIVARFIAEFVREESTNKKVKLFS 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 19001666 19005411 + Bpe011038.1 Bpe13g01378 114158

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g01378 337 PRINTS Epoxide hydrolase signature 301 323 IPR000639 GO:0003824
Bpe13g01378 337 PRINTS Epoxide hydrolase signature 107 122 IPR000639 GO:0003824
Bpe13g01378 337 PRINTS Epoxide hydrolase signature 87 105 IPR000639 GO:0003824
Bpe13g01378 337 PRINTS Epoxide hydrolase signature 166 179 IPR000639 GO:0003824
Bpe13g01378 337 SUPERFAMILY alpha/beta-Hydrolases 81 325 IPR029058 -
Bpe13g01378 337 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 23 331 - -
Bpe13g01378 337 Gene3D alpha/beta hydrolase 71 334 IPR029058 -
Bpe13g01378 337 Pfam Alpha/beta hydrolase family 83 318 IPR000073 -
Bpe13g01378 337 PRINTS Alpha/beta hydrolase fold signature 107 122 IPR000073 -
Bpe13g01378 337 PRINTS Alpha/beta hydrolase fold signature 166 179 IPR000073 -
Bpe13g01378 337 PRINTS Alpha/beta hydrolase fold signature 152 165 IPR000073 -
Bpe13g01378 337 PRINTS Alpha/beta hydrolase fold signature 270 284 IPR000073 -
Bpe13g01378 337 PANTHER HYDROLASE 23 331 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g01378 - - - pvy:116123531 492.271
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe11g00054 Bpe-Chr11:401904 Bpe13g01378 Bpe-Chr13:19001666 1.15E-147 dispersed
Bpe13g01378 Bpe-Chr13:19001666 Bpe15g00423 Bpe-Chr15:15773248 4.57E-16 dispersed
Bpe11g01427 Bpe-Chr11:10615989 Bpe13g01378 Bpe-Chr13:19001666 1.63E-101 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g45 . Blo16g01089 . Bda11g01180 Bpe13g01378 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone9ag0543 . . . . . . . Bda11g01180 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001673 2 3 2 2 3 2 3 2 2 2 2 2 2 2 2 3 2 3 3 2 3 3 2 2 2 2 2 3 3 2 70