Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g01387 ATGGTTCGAGGCCTTTCAGTTTGTAATCTTCAGGCCTCAAGAAATAATGGTGTTTATGGGTCAACCCCTTCATGGAGGAGTCATGTCAAGCTGATGAGGAATACTATGATAACTTCTATGCTTTCCAGAAATTATATGTGGGATAAATATGTTCAGGGATGTTTCTTATCCAGCACACCCACAATGTTTAGACGGAGAAATTGTAGAGTTCAAGCTGGGTGGCTGTTCAAAGGGAGTGGACAAGGGTTGGATGCACATTCTGAGCGTAGTGAGAGTGCTAATCAAGATATTTTGATCTTCTTTTTCCATCTTGATCTGGAAACCCGAGTACAGTATGCCTTGAATCTGGAGCAATATGAAATTGCTCAACAACTGAGAAGCAAGATTACGGAGGTTGAAGAAGAAATAAGCAGACGGCTAGAATCAAAAAGAGGACTGTCTTCAAAGAGTGATGTGCAGGACAAAGCTTTAAGTATCATTAGGCTACGTGCAGATCTGCAGAAAGCTATTGACAGTGAAAATTATTCCTTGGCAGCTCAACTACGGGATGAAATTTCCAATTTGGAGGCAGAATCTCTTGCTGCGTCAGCAAAAGCACTGGTATATGAAAATGCAAATTATTCATTCCGCCTTGGGCAGAAAGTGAAGCACAAAATCTTCGGATATAAAGCTGTAGTTTGTGGAATGGATCCAGTTTGCTGTGAATCAAGCTCATGGAAGGAGGTTGCGCGTGTTGAAAAGTTGCCACGTGGTTCTAATCAGCCATTTTATCAGGTTTTGGTGGATGTTCGTGCCGACCCTGATCTATTGGTGGCATATGTTCCTGAAGAGAATCTCCTATCCCCTGAGAAACCTGACCAGGGCCGATTTGACCATCCTTACACTTCATTCTTATTTTATGGAGCGGATGCAGCTGGTGACTTCATTCCAATCAAGCAACTGCGCGAGAAGTACAACCGGGCTCGCCATGAAATACCCATGGATCTCGAAGACGGAGAACCGGGTGGTGAAACTTGA 1017 43.46 MVRGLSVCNLQASRNNGVYGSTPSWRSHVKLMRNTMITSMLSRNYMWDKYVQGCFLSSTPTMFRRRNCRVQAGWLFKGSGQGLDAHSERSESANQDILIFFFHLDLETRVQYALNLEQYEIAQQLRSKITEVEEEISRRLESKRGLSSKSDVQDKALSIIRLRADLQKAIDSENYSLAAQLRDEISNLEAESLAASAKALVYENANYSFRLGQKVKHKIFGYKAVVCGMDPVCCESSSWKEVARVEKLPRGSNQPFYQVLVDVRADPDLLVAYVPEENLLSPEKPDQGRFDHPYTSFLFYGADAAGDFIPIKQLREKYNRARHEIPMDLEDGEPGGET 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 19085504 19087942 + Bpe011048.1 Bpe13g01387 114167

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g01387 338 Pfam UvrB/uvrC motif 159 190 IPR001943 GO:0005515
Bpe13g01387 338 SUPERFAMILY YccV-like 207 303 IPR036623 GO:0003677
Bpe13g01387 338 Coils Coil 178 198 - -
Bpe13g01387 338 Pfam Hemimethylated DNA-binding protein YccV like 208 304 IPR011722 GO:0003677
Bpe13g01387 338 PANTHER SI:DKEY-261L7.2 87 332 - -
Bpe13g01387 338 TIGRFAM yccV: hemimethylated DNA binding domain 207 308 IPR011722 GO:0003677
Bpe13g01387 338 Coils Coil 122 142 - -
Bpe13g01387 338 Gene3D - 205 305 IPR036623 GO:0003677
Bpe13g01387 338 SMART YccV_like_2_a 206 310 IPR011722 GO:0003677
Bpe13g01387 338 PANTHER SI:DKEY-261L7.2 87 332 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g01387 - - - jre:109002884 488.804
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g76 . . . Bda11g01189 Bpe13g01387 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0548 . . . . . . . . Bda11g01189 . . . Bma06g00725 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010259 2 3 0 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 1 1 2 1 1 31