Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g01393 GCCAAAATGAATGCAGCGTCGTTAGAGTTTGAAAACCCGATTCGAGATGCCATTTCCAGAATTCGATTTGCTCCGCGTTCGAATAACCTCCTTATTTCATCATGGGACTCCACTCTTCGGCTGTACGACGTGGATAATGCCACGGTAAAGTTAGAGATTACATCAGAATCCCCGCTGCTGGATTGTTGTTTTCAGGATGAGTTTGTTGCATTTAGTGCTTCCTCTGATGGCTTTATAAGAAGGTATGATTTGCATTCCGGAAAAACTCATAACATTGGAAATCATGATGATATAGCGATGTGCATTGGGTATTCTGATGAAACATATCAACTAGTAACAGCGGGTCTAGACAGAAAGATAGTTTTCTGGGATACACATATGGCACAAGCTCATGTATTAAAGAATATTAGTTTAGATGTAGAATCAATGTCACTCTTTGGGTTCCGTTTAATAGTAGCCAATGGTACATCATTATATTTGTATGATTTGCGCAACCTGAAAAAACCAGTTCAATCAAAAGACTCGCAAATGGATGTTCAAATAGGATGCATCGCTTCAATTCCTTATCGTCAAGCAGGGTTTGCTGTTGGATCAGTTGATGGGCGTGTGGCGTTGGAGATCCCCTCAACAGACTACGCAGATGATATAAGGTATATTTTTCGATGTCATCCAAAAGCAAAGACAGGAAAAACTTATCTAGTGCCAGTAAATGACATTGCATTTCATCCAACAATTCCTGGTACCTTTGTTACTGGTGATAACGAGGGCCTTGTCATTGCGTGGGATTTCCAAAGCAAAAGAAAACTCCTTGAGTTGCCGAGATATCCAAATAAAGTGGCATCCTTGTCTTACAACAATGGGGGACAAACTTTGGCTGTAGCTTCAAGCTACACATACCAAGACGCCCTCGAAATGTTGGTTTTCCTCCATATCTTTACATTATCTTCATTTACTTTTGTTTTTTAG 966 40.17 AKMNAASLEFENPIRDAISRIRFAPRSNNLLISSWDSTLRLYDVDNATVKLEITSESPLLDCCFQDEFVAFSASSDGFIRRYDLHSGKTHNIGNHDDIAMCIGYSDETYQLVTAGLDRKIVFWDTHMAQAHVLKNISLDVESMSLFGFRLIVANGTSLYLYDLRNLKKPVQSKDSQMDVQIGCIASIPYRQAGFAVGSVDGRVALEIPSTDYADDIRYIFRCHPKAKTGKTYLVPVNDIAFHPTIPGTFVTGDNEGLVIAWDFQSKRKLLELPRYPNKVASLSYNNGGQTLAVASSYTYQDALEMLVFLHIFTLSSFTFVF 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 19128756 19132453 + Bpe011054.1 Bpe13g01393 114173

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g01393 321 Gene3D - 2 307 IPR015943 GO:0005515
Bpe13g01393 321 ProSiteProfiles Trp-Asp (WD) repeats profile. 92 124 IPR001680 GO:0005515
Bpe13g01393 321 PANTHER MRNA EXPORT FACTOR AND BUB3 3 307 - -
Bpe13g01393 321 PANTHER MITOTIC CHECKPOINT PROTEIN BUB3.3 3 307 - -
Bpe13g01393 321 SUPERFAMILY WD40 repeat-like 15 296 IPR036322 GO:0005515
Bpe13g01393 321 SMART WD40_4 213 262 IPR001680 GO:0005515
Bpe13g01393 321 SMART WD40_4 46 83 IPR001680 GO:0005515
Bpe13g01393 321 SMART WD40_4 85 124 IPR001680 GO:0005515
Bpe13g01393 321 SMART WD40_4 7 43 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g01393 K02180 BUB3; cell cycle arrest protein BUB3 - jre:109002893 401.364
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00473 Bpe-Chr5:19032683 Bpe13g01393 Bpe-Chr13:19128756 4.61E-66 dispersed
Bpe09g00437 Bpe-Chr9:11193126 Bpe13g01393 Bpe-Chr13:19128756 2.42E-28 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g946 . . . . Bpe13g01393 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cpe07g00645 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003570 0 3 1 1 1 2 1 2 1 1 1 2 1 2 2 1 2 2 1 2 1 1 3 1 1 0 3 3 1 1 44