Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g01404 ATGGAGGAACCGGCCTCATCGATCTGTAACCTAGGTATTTTAGACAAACTCAATGACCGCACAATTCAAGAGCTACTTCATAGCTACGACGGATTCTTCAAAACCACGGAGCATCTCCTAAATGGCGGTGCGGATCTTTCTATGCATTCAGAGTTTGTAGCTCATGTCCACTCTCTATGCAGTGACGGCCTCGTCTCTCTGGTTTGCGATCACTTTCTTCGCACACTTGAGAAAAACTTCGAAAAGCAGGGGGCTTCCAGATTTTGGATGCATTTCCAGGCTTATGGAGATTCTTCGATTCTAATCAGCGATAACCCCATTAGCTCGAAGTATGGAGTTCAGGAAGTTCTATGCAAAGCTTTGGAAGAGATATCTTCGGAAAAGAAATATCTGGAAGATTGTTTGTCGATACTGGTTGATTCTTTGCAGACATGGAAGAACAATGTATCAGAAGGAAATCACAGTTCACATGCAGAAAGATCATATCTCATGGCTAAGCTTCAGTACCTCATTTCCTCAGTCCTTATGGCTTCTCTCCCCCGCCATTTTCCAGACATACTAAACTGGTACTTTAAAGGAAGATTGGAGGAGTTGAACAAAATCATGGCAGGACATGAATCTCAAAGCGGAGACTACATGGATTTGGATAAAAAAAGTGAAAGTTTAAATTCAGATAAGTTAGATGATGATGATGATGATGATGATGAATTCCATCAGCAAGAGTTCTCTGATGTCGGTAAATTAGTGAAGAACATTGGAAAGGTCGTTTTTGATCTTAGAAATCTTGGGTTTACATCTTTGGCAGAAGACGCTTACGCCTCTGCTATATTTTTGCTTCTAAAGGATAAAGTTCATGAACTTGCCAGTGATGATTATAGAAGTTCTATATTGGAGTCTATAAAAGGGTGGATTAAGGCTGTGGCCCTCCAGTTTCTACATGCCCTTCTTGCATATCTAGGAGAATCTGATAGTAAAGATAGTTCTTTGTCCGAATTGAAATCGCCCTTAGCTACCAACTTGTCGTCATCCTATTCTGGACTGGATACTTCTTCTGAAGTACTTGTGAGATGGCAGTTGCGATTGGAATATTTTGCTTATGAAACACTCCAAGATTTGAGAATAGCCAAACTGTTCGAAATAATAGTGGATTATCCTGAGAGCTCTCCTGCAATCGAAGATCTTAAGCAATGCCTTGAATATACCGGACAACACTCTAAGCTAGTTGAATCGTTCATCTCATCATTGCAATATCGCCTGCTCACTGCAGGTGCCTCAACCAATGATATATTGCATCAATATGTTTCGACAATAAGAGCACTCCGCACTATAGACCCAGCAGTGGTTTTTCTCGAAGCAGTTGGTGAACCAATAAGGGACTATTTAAGACGAAGAAAAGATACCATTAAATGCATTGTAACCATGCTAACTGATGGAACTGGTGGAAATCCAAATGCATCTGGAAATACAGGTGATAGCCTTCTTGAAGAATTAAACAAAGATGAAGAAAGTCAAGATAATACTGGTATTTACGATGACTTTCACACTGATGATAAGCAAGCTTGGATAAATTGTAGTTGCTGGGAGCCTGACCCCGTCGAAGCCGACCCAGCAAAGGGTGGCAGGACTAGAAGGAAGGTTGACATACTTGGAATGCTTGTTAGTATAATCGGTTCGAAAGACCAATTAGTCAATGAATATCGAGTTATGCTTGCCGAAAAGCTTCTGAACAAATCTGATTATGATATCGACTCAGAGATACGTACCCTAGAACTACTTAAAGTGAGTATGATTTTAGTTACTGTATATCTGCAGATATATTTTGGAGAAAGCAGTATGCAGAAATGTGAAATTATGCTGAATGATCTGATTGATTCTAAGAGGACAAACTCAAACATTAAAGCAACCATAAATAAGCTTTCCAAGACAACTGTTGAGCTCCAGGAAAGTGCTGCATCAATGGAAATGCTGGATGCAACAATCATATCTTCAAATTTCTGGCCTCCAATTCAGGATGAAAGCCTTACCCTACCTCCACAAATTGACAATCTGCTTTCTGATTATGCAAAGCGATTTAATGAAATCAAGACCCCTCGGAAGCTACAGTGGAAGAAAAATTTGGGGACCGTGAAGTTGGAATTGCAATTTGAAGGAAGAGAAATACAGTTCACAGTTGCTCCAGTCCATGCGGCAATTATTATGCAATTTCAAAATCAAACAAGGTCAATTGAGCATTTTATTTCAATAATCATTCATCTTCCTATTTTTCAAATATCTGAAGTTTCTTCTTTTAGCTGGAGCTCCACAACTCTTGCAGCTGCTGTTGGTTTGCCAGCAGATATCCTCAACCGGAGGATAAATTTCTGGGTTAGTAAGGGAATCATTGCAGAATCTCTTGGGGCAGACTCTAATGACCATGTCTATATGCTTGTGGAAAGCATGGGTGAGTCTAGTAAGAACAGTGCAAACCACGACAATTGTGATGGGGAGCTTTTAATAGGCGACGAGGAGGGAGAGAGATCCATCACCTCTGTGGAGGACCAGCTGCGCAAGGAAATGACTGTGTATGAGAAGTTTATCCTTGGTATGCTAACAAATTTTGGAAGCATGACGCTGGATCGAATCCACAATACTCTCAAGATGTTTTGTGTTGCCGATCCGTCCTACGATAAATCTCTCCAGCAGCTGCAGAGCTTTTTATCAGGGCTTGTTTCTGAAGAGAAGTTGGACCTAAAAGATGGCTCCTACATCTTGAAGAAATAA 2760 40.58 MEEPASSICNLGILDKLNDRTIQELLHSYDGFFKTTEHLLNGGADLSMHSEFVAHVHSLCSDGLVSLVCDHFLRTLEKNFEKQGASRFWMHFQAYGDSSILISDNPISSKYGVQEVLCKALEEISSEKKYLEDCLSILVDSLQTWKNNVSEGNHSSHAERSYLMAKLQYLISSVLMASLPRHFPDILNWYFKGRLEELNKIMAGHESQSGDYMDLDKKSESLNSDKLDDDDDDDDEFHQQEFSDVGKLVKNIGKVVFDLRNLGFTSLAEDAYASAIFLLLKDKVHELASDDYRSSILESIKGWIKAVALQFLHALLAYLGESDSKDSSLSELKSPLATNLSSSYSGLDTSSEVLVRWQLRLEYFAYETLQDLRIAKLFEIIVDYPESSPAIEDLKQCLEYTGQHSKLVESFISSLQYRLLTAGASTNDILHQYVSTIRALRTIDPAVVFLEAVGEPIRDYLRRRKDTIKCIVTMLTDGTGGNPNASGNTGDSLLEELNKDEESQDNTGIYDDFHTDDKQAWINCSCWEPDPVEADPAKGGRTRRKVDILGMLVSIIGSKDQLVNEYRVMLAEKLLNKSDYDIDSEIRTLELLKVSMILVTVYLQIYFGESSMQKCEIMLNDLIDSKRTNSNIKATINKLSKTTVELQESAASMEMLDATIISSNFWPPIQDESLTLPPQIDNLLSDYAKRFNEIKTPRKLQWKKNLGTVKLELQFEGREIQFTVAPVHAAIIMQFQNQTRSIEHFISIIIHLPIFQISEVSSFSWSSTTLAAAVGLPADILNRRINFWVSKGIIAESLGADSNDHVYMLVESMGESSKNSANHDNCDGELLIGDEEGERSITSVEDQLRKEMTVYEKFILGMLTNFGSMTLDRIHNTLKMFCVADPSYDKSLQQLQSFLSGLVSEEKLDLKDGSYILKK 919
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 19271428 19277643 + Bpe011066.1 Bpe13g01404 114184

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g01404 919 SUPERFAMILY Cullin homology domain 523 807 IPR036317 -
Bpe13g01404 919 Gene3D - 834 919 IPR036388 -
Bpe13g01404 919 ProSiteProfiles Cullin family profile. 551 789 IPR016158 -
Bpe13g01404 919 Gene3D Cullin Repeats 491 639 - -
Bpe13g01404 919 PANTHER BNAC04G32030D PROTEIN 14 754 - -
Bpe13g01404 919 PANTHER BNAC04G32030D PROTEIN 755 919 - -
Bpe13g01404 919 SMART APC2_2 858 917 IPR014786 -
Bpe13g01404 919 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 2 14 754 IPR044554 -
Bpe13g01404 919 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 2 755 919 IPR044554 -
Bpe13g01404 919 Pfam Cullin family 545 741 IPR001373 GO:0006511|GO:0031625
Bpe13g01404 919 Pfam Anaphase promoting complex (APC) subunit 2 858 916 IPR014786 -
Bpe13g01404 919 Gene3D Cullin; Chain C, Domain 2 655 824 - -
Bpe13g01404 919 SUPERFAMILY Winged helix DNA-binding domain 848 917 IPR036390 -
Bpe13g01404 919 SMART cul_2 547 715 IPR016158 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g01404 K03349 APC2, ANAPC2; anaphase-promoting complex subunit 2 - qsu:112005549 1235.71
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe11g01459 Bpe-Chr11:10839992 Bpe13g01404 Bpe-Chr13:19271428 7.03E-07 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g937 . Blo16g01110 . Bda11g01210 Bpe13g01404 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0944 Cone19ag0936 . . . . . . . . . Bda11g01210 . . . Bma06g00701 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010260 1 2 1 2 1 1 1 1 1 1 1 1 1 0 1 1 1 2 0 1 1 0 2 1 1 1 1 1 1 1 31