Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g01406 ATGGGTCTTTGCAGGAAAATGGCAGTCTCTGGTTTTCTAGTAACGTGCTTTCTCTTGTCACTTTCCTACGCCAATGGCTATGGTGGAGAAGGCTGGACTAATGCCCATGCGACCTTTTACGGCGGAAGCGATGCCTCAGGAACAATGGGCGGGGCTTGTGGGTACGGAAACCTCTACAGCCAAGGCTATGGCACAAACACAGCAGCTCTAAGCACCGCTCTGTTCAACAGCGGACTGAGCTGCGGCTCTTGCTACGAGATCAGATGCGCCGGCGACCGGAAATGGTGCCTTCCTGGCTCGATTGTGGTGACGGCGACCAACTTTTGCCCTCCCAATAATGCACTTCCTAACGACGCCGGCGGTTGGTGCAACCCGCCCAGGCACCATTTTGACCTTTCTCAGCCTGTGTATCAACACATTGCGCAGTACCGAGCTGGGATAGTCCCTGTTTCCTACAGAAGGGTATCCTGCAAAAGAAGGGGAGGGATCCGATTCACCATTAACGGCCACTCCTACTTCAACCTGGTTCTGATCACAAACGTGGGCGGCGCCGGCGACGTCCATGCAGTTTCCGTCAAAGGTTCCAGAACTGGTTGGCAGCCAATGTCCAGAAACTGGGGCCAAAACTGGCAGAGCAACTCCTACCTTAACGGACAGACCCTTTCGTTCAAAGTCACCACCAGCGACGGCCGGAGCATAATGTCCTACAACGTTGCTCCGGCCGACTGGTCCTTCGGGCAGACCTACAGTGGGGCTCAATTTATGTAG 768 54.82 MGLCRKMAVSGFLVTCFLLSLSYANGYGGEGWTNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNSGLSCGSCYEIRCAGDRKWCLPGSIVVTATNFCPPNNALPNDAGGWCNPPRHHFDLSQPVYQHIAQYRAGIVPVSYRRVSCKRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSVKGSRTGWQPMSRNWGQNWQSNSYLNGQTLSFKVTTSDGRSIMSYNVAPADWSFGQTYSGAQFM 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 19294928 19296392 + Bpe011068.1 Bpe13g01406 114186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g01406 255 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 172 251 IPR007117 -
Bpe13g01406 255 Gene3D - 21 158 IPR036908 -
Bpe13g01406 255 SUPERFAMILY Barwin-like endoglucanases 15 180 IPR036908 -
Bpe13g01406 255 PANTHER EXPANSIN 15 254 - -
Bpe13g01406 255 Pfam Lytic transglycolase 67 152 IPR009009 -
Bpe13g01406 255 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 162 IPR007112 -
Bpe13g01406 255 Gene3D - 162 255 IPR036749 -
Bpe13g01406 255 PRINTS Expansin/Lol pI family signature 199 213 IPR007118 GO:0005576
Bpe13g01406 255 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576
Bpe13g01406 255 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576
Bpe13g01406 255 PRINTS Expansin/Lol pI family signature 237 251 IPR007118 GO:0005576
Bpe13g01406 255 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576
Bpe13g01406 255 PRINTS Expansin/Lol pI family signature 145 161 IPR007118 GO:0005576
Bpe13g01406 255 PANTHER EXPANSIN-A15 15 254 IPR002963 GO:0009664
Bpe13g01406 255 SMART dpbb_1 67 152 IPR007112 -
Bpe13g01406 255 PRINTS Expansin signature 208 229 IPR002963 GO:0009664
Bpe13g01406 255 PRINTS Expansin signature 237 253 IPR002963 GO:0009664
Bpe13g01406 255 PRINTS Expansin signature 137 150 IPR002963 GO:0009664
Bpe13g01406 255 PRINTS Expansin signature 89 100 IPR002963 GO:0009664
Bpe13g01406 255 PRINTS Expansin signature 120 137 IPR002963 GO:0009664
Bpe13g01406 255 PRINTS Expansin signature 62 76 IPR002963 GO:0009664
Bpe13g01406 255 PRINTS Expansin signature 101 111 IPR002963 GO:0009664
Bpe13g01406 255 PRINTS Expansin signature 173 194 IPR002963 GO:0009664
Bpe13g01406 255 PRINTS Expansin signature 161 173 IPR002963 GO:0009664
Bpe13g01406 255 SUPERFAMILY PHL pollen allergen 159 250 IPR036749 -
Bpe13g01406 255 Pfam Expansin C-terminal domain 163 240 IPR007117 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe11g01647 Bpe13g01406 CCT
Bpe11g01647 Bpe13g01406 ECH
Bpe10g00880 Bpe13g01406 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00743 Bpe-Chr4:4754375 Bpe13g01406 Bpe-Chr13:19294928 4.49E-128 dispersed
Bpe04g01713 Bpe-Chr4:22972599 Bpe13g01406 Bpe-Chr13:19294928 1.49E-126 dispersed
Bpe08g00100 Bpe-Chr8:548069 Bpe13g01406 Bpe-Chr13:19294928 1.80E-126 dispersed
Bpe11g00077 Bpe-Chr11:531013 Bpe13g01406 Bpe-Chr13:19294928 2.43E-143 dispersed
Bpe04g01769 Bpe-Chr4:23283611 Bpe13g01406 Bpe-Chr13:19294928 1.49E-75 transposed
Bpe07g00683 Bpe-Chr7:13496850 Bpe13g01406 Bpe-Chr13:19294928 4.17E-93 transposed
Bpe09g00714 Bpe-Chr9:15732808 Bpe13g01406 Bpe-Chr13:19294928 1.41E-92 transposed
Bpe15g01207 Bpe-Chr15:20770144 Bpe13g01406 Bpe-Chr13:19294928 3.72E-125 transposed
Bpe10g00880 Bpe-Chr10:14579466 Bpe13g01406 Bpe-Chr13:19294928 9.26E-158 wgd
Bpe11g01647 Bpe-Chr11:12629830 Bpe13g01406 Bpe-Chr13:19294928 1.86E-142 wgd
Bpe13g01406 Bpe-Chr13:19294928 Bpe07g00778 Bpe-Chr7:14251584 3.27E-135 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g01406 - - pop:7460697 469.159