Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g01415 TCTGTGAAGCAAGCATACGACGCATTGTTGTTGGATGCTGGAGGAACCCTTTTGCAGTTGGCTAAACCAGTAGAGCAGACTTATGCAGAAATCGGCCGCAGATACGGTTTAACAGCTACTCCTGCTCAGATAAAGCAAGGATTTAAGAGAGCTTTTACTGCTCCATGGCCCGAAAAGCTTAGATATCTGGGGGATGGAAGGCCATTTTGGAAACTTGTCGTTACGGAAGCCACTGGTTGTGCTGACAGTGATTATTTTGAAGAAGTATACCAGTACTATGCAGAAGGTGATGCATGGCATCTCCCAGAAAAAGCTCAAGAAACCATTATTCTACTCAAAGATGCAGGAGTGAAGGTAGTTGTAGTGTCCAATTTCGACATGCGGTTAAGGAAGCTATTGAAGGACCTAAATGTTTTAGATTTGTTTGATGCTGTGATAATATCATCCGAGGTTGGATATGAAAAACCAGATGAAAGGATATTTAAAGCTGCCCTAGAACAGGTCAATGTGGAGGCTGGTAAAGCAATCCATGTCGGTGATGATGAAAAAGCAGATAAAGATGGGGCAAATGCTGTTGGAATTGCTTGTTGGTTGTGGGGAAGTGAGATAAAGACATTCTCAGACATACAAAACAGAATACTTGTTCCTGAAACATAG 657 42.31 SVKQAYDALLLDAGGTLLQLAKPVEQTYAEIGRRYGLTATPAQIKQGFKRAFTAPWPEKLRYLGDGRPFWKLVVTEATGCADSDYFEEVYQYYAEGDAWHLPEKAQETIILLKDAGVKVVVVSNFDMRLRKLLKDLNVLDLFDAVIISSEVGYEKPDERIFKAALEQVNVEAGKAIHVGDDEKADKDGANAVGIACWLWGSEIKTFSDIQNRILVPET 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 19389120 19397562 + Bpe011077.1 Bpe13g01415 114195

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g01415 218 Pfam Haloacid dehalogenase-like hydrolase 69 196 IPR041492 -
Bpe13g01415 218 Gene3D - 22 94 IPR044924 -
Bpe13g01415 218 CDD HAD_dREG-2_like 105 215 - -
Bpe13g01415 218 Gene3D - 10 199 IPR023214 -
Bpe13g01415 218 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 6 199 - -
Bpe13g01415 218 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 6 17 IPR006439 -
Bpe13g01415 218 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 142 158 IPR006439 -
Bpe13g01415 218 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 160 180 IPR006439 -
Bpe13g01415 218 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 112 125 IPR006439 -
Bpe13g01415 218 PANTHER F14L17.7 PROTEIN 2 217 - -
Bpe13g01415 218 TIGRFAM DREG-2: HAD hydrolase, REG-2-like, family IA 9 198 IPR011949 -
Bpe13g01415 218 SFLD Haloacid Dehalogenase 6 199 - -
Bpe13g01415 218 TIGRFAM HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 111 193 IPR006439 -
Bpe13g01415 218 SUPERFAMILY HAD-like 6 202 IPR036412 -
Bpe13g01415 218 PANTHER - 2 217 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g01415 - - - cpap:110809172 372.859
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g01384 Bpe-Chr4:20504780 Bpe13g01415 Bpe-Chr13:19389120 5.89E-27 dispersed
Bpe08g00784 Bpe-Chr8:9712177 Bpe13g01415 Bpe-Chr13:19389120 5.48E-11 dispersed
Bpe13g01415 Bpe-Chr13:19389120 Bpe03g01092 Bpe-Chr3:30086346 2.65E-60 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g897 . Blo16g01120 . Bda11g01221 Bpe13g01415 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0595 Cone9ag0598 . . . . . . . Bda11g01221 . . . . . . . . . . . . Cpe07g00653 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006918 1 1 1 0 1 1 1 1 1 2 1 1 1 0 1 1 1 2 1 1 1 1 1 1 2 1 1 1 2 1 32