Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g01417 ATGGCTGATAATCAAAGAAGTGGTCCCGCTCAGAGAGATATAGAGCAGGCCATTACAGCTCTTAAGAAAGGCGCATATTTGTTGAAGTATGGACGAAGAGGGAAGCCAAAGTTCTGCCCGTTCAGACTTTCAAATGATGAATCTTTACTCATATGGTACTCTGGAAAGGAAGAGAAACACCTAAAAATAAGTCATGTTTCAAAGATTATTCCTGGACAATGCACTGCAATATTCCAGCAGTATCCTCGGCCAGAAAAAGAGTATCAGTCCTTTTCACTTTTATATGGTGATAGGTCCCTTGATTTGATTTGTAAAGACAAGGATGAGGCCGAAGTTTGGTTTGTTGGTCTTAAGGCATTAATTAATCGAGGAAACCTCCGCAGGTGGAGAAGTGATTATAGATGTAACAGTGTTTCATCAGATAGTCCACATACTCGTACCAAAAGAAATTCTCCTTCGATTACTCCATTTGATCCTGGAGATACTGAAGGGAGTCATTTTGAGAACATTTCACAAAGTAGACTAGGAAAAGCATTTTCTGAAATATTAACGTATACTGCTGTTACCAGAAGTATCAGTCAGCCTGAATTGGTCACCAATCCCTCTCTCTCAGCTGGGTCTGTAGATAATTCAAATGGGAGAAGTTCTGCATCTGACGGGTTTCGGATCAGTTTATCTAGTGCAGTAAGTTCTTCGAGCCAAGGCTCTTGTCCTGAAGATTTTGACGCCTTAGGTGATGTATTCATCTGGGGAGAAGGTGTTGAGGCAGGATTGCTGGGGGGTGGCTTGCATAGAGTTGGGAGTTCAACTGATTTCAAGATGGATGCTCTTCTACCTAAGGCGTTGGAGTCATCAATGGTTTTAGATATCCATGGCATTGCTTGTGGTAGTAGACATGCTGTGATAGTCACCAGACGAGGAGAGGTTTTCAGTTGGGGAGAGGAGTCAGGAGGGAGGCTTGGACATGGTGTAGATGCTGATGTTTCTCATCCAAAGATCATTAACAGTCTTAGTGGCATGAATATTGAATCAGTAGCTTGTGGGCAGTATCACACATGTGCAGTTACATATTCAGGGGACCTTTACACATGGGGAGGTGGAACTCACCCTTTCGGTCTGCTTGGCCATGGTAGCGAAGTTAGTCATTGGATTCCAAAAAAAGTATGTGGTCGTATGGAGGGTATACATGTATCATTTATTTCTTGTGGTCCTTGGCATACAGCTGTTGTGACATCTGCCGGGCAGTTGTTCACATTTGGGGATGGATCATTTGGTGCTCTCGGCCATGGCAATCGTAGTAACATTAATACCCCGCGAGAAGTAGAAACTTTAAGAGGTCAAAGAATAACAAGAGTTTCTTGTGGTGTTTGGCATACTGCTGCTGTTGTCGAAGTAATTAATGAATCATCTAGCTCTGTTTCAGGTAAGTTTACATCTGGAAAACTGTTCACCTGGGGGGATGGAGATAAAGGACGTCTTGGGCATGGCGATAAAGAATCTAGACTAGTTCCTGAATGTGTAGTTGCATTAGCTAGTGAAAATGTTTGTCAAACTGCATGTGGTCTCAATCTCACTGTTGTTCTAACAACTTCCGGACAAGTATATACAATGGGAAGTGCCACTTATGGACAGTTGGGCAGTCCTATGGCTGATGGGATGATTCCCATGCGCGTCGAAGGGAACCTTTCCAACAATTTTGTTGAAGCAATTTCATGTGGTTCTTATCATACTGCAGTTTTAACTTCCAAAGCTGAGGTTTATACTTGGGGAAAAGGTTCGAATGGACAACTAGGCCATGGGGATAATGATCATAGAAATACGCCAACTCTCGTTAATCCTCTTAAAGATAAGCAAGTAAAGAATGTGGTTTGTGGGTCAAACTTTACTGCTGTCATATGTCTTCATAAATGGGTAACTAGTGTGGATCATTCTCTTTGCTCCTGCTGTCACAATGCATTCAGCTTTAGACGAAAGCGCCACAATTGTTACAACTGTGGGTTAGTATTTTGCAAAGCATGCAGTAGCAAGAAATCTCTTAAAGCTTCATTGGCTCCCAATACAAATAAGCCATATCGTGTATGTGATGAGTGTTTTAGTAAACTAAAGAAAGCTTTGGAAACTAATTCAGCTTTGCACAAGTCTAAAGTCAAAACTGAAAGTGCGCATAAATCTCACGACGTAGGAGATAGGGAGACATGGGCTCCTAAATTCCAAGGAGCTCTCTCAAGACTTTCATCTTTTGGCTCTCTCAATAATACCGAAAGCAAGCATTTGAACCATGATAAGGTGTTTTCATCATCTATCCCAGTTTCGAGATTGGCTTCCTGGGCAACATCTCCTATCTCAGGAATTTCTAGCCCATATATTTCATCTGAAGAACTTCTGCATTCGAAGAACACAAACGAAAGTTTAAGCCAAGAAATCATTATTCTAAGGGCTCAGGTAGAAAGTCTTACTTGCCAATCCCAAAATCTCGAAGCAGAGCTTGCAAGAACATCAAGGCAACTGAAAGAAGTCACTATGGTAGCTGCAGATGAGGCTGAAAAATGTAAATCTGCTAAAGAAGTTATCAAATCTCTTACTGCTCAGTTGAAAGAGATGGCTGAAAGACTACCAGAAGAACAGACAGGTCAGCTCACTGTCAATCTAAATACCCTTGCGACAGAGAGCAATTCTATGAGCATGAACACTGATACCAGGTCTAATGGCAACTTAACACATCCACCAAGTGGAGGAGAAACTCAATCTGGAAAGGGAGAATCGGTGATACAAGATGAACCAGGCGTATACATAACTTTGTCCCCTCTGCCAGATGGTGGCTGTGAGCTCAAACGTGTGCGGTTCAGTCGGAGACGTTTCACTGAAGAACAAGCAGAAAAATGGTGGACAGAAAATGGAGCAAAAGTCTGCGAGAGGCACAATATTCGGAGTACAGACTGA 2940 42.28 MADNQRSGPAQRDIEQAITALKKGAYLLKYGRRGKPKFCPFRLSNDESLLIWYSGKEEKHLKISHVSKIIPGQCTAIFQQYPRPEKEYQSFSLLYGDRSLDLICKDKDEAEVWFVGLKALINRGNLRRWRSDYRCNSVSSDSPHTRTKRNSPSITPFDPGDTEGSHFENISQSRLGKAFSEILTYTAVTRSISQPELVTNPSLSAGSVDNSNGRSSASDGFRISLSSAVSSSSQGSCPEDFDALGDVFIWGEGVEAGLLGGGLHRVGSSTDFKMDALLPKALESSMVLDIHGIACGSRHAVIVTRRGEVFSWGEESGGRLGHGVDADVSHPKIINSLSGMNIESVACGQYHTCAVTYSGDLYTWGGGTHPFGLLGHGSEVSHWIPKKVCGRMEGIHVSFISCGPWHTAVVTSAGQLFTFGDGSFGALGHGNRSNINTPREVETLRGQRITRVSCGVWHTAAVVEVINESSSSVSGKFTSGKLFTWGDGDKGRLGHGDKESRLVPECVVALASENVCQTACGLNLTVVLTTSGQVYTMGSATYGQLGSPMADGMIPMRVEGNLSNNFVEAISCGSYHTAVLTSKAEVYTWGKGSNGQLGHGDNDHRNTPTLVNPLKDKQVKNVVCGSNFTAVICLHKWVTSVDHSLCSCCHNAFSFRRKRHNCYNCGLVFCKACSSKKSLKASLAPNTNKPYRVCDECFSKLKKALETNSALHKSKVKTESAHKSHDVGDRETWAPKFQGALSRLSSFGSLNNTESKHLNHDKVFSSSIPVSRLASWATSPISGISSPYISSEELLHSKNTNESLSQEIIILRAQVESLTCQSQNLEAELARTSRQLKEVTMVAADEAEKCKSAKEVIKSLTAQLKEMAERLPEEQTGQLTVNLNTLATESNSMSMNTDTRSNGNLTHPPSGGETQSGKGESVIQDEPGVYITLSPLPDGGCELKRVRFSRRRFTEEQAEKWWTENGAKVCERHNIRSTD 979
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 19418907 19425911 + Bpe011080.1 Bpe13g01417 114197

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g01417 979 PRINTS Chromosome condensation regulator RCC1 signature 359 375 IPR000408 -
Bpe13g01417 979 PRINTS Chromosome condensation regulator RCC1 signature 416 430 IPR000408 -
Bpe13g01417 979 PRINTS Chromosome condensation regulator RCC1 signature 521 539 IPR000408 -
Bpe13g01417 979 PRINTS Chromosome condensation regulator RCC1 signature 400 416 IPR000408 -
Bpe13g01417 979 PRINTS Chromosome condensation regulator RCC1 signature 309 325 IPR000408 -
Bpe13g01417 979 PRINTS Chromosome condensation regulator RCC1 signature 579 600 IPR000408 -
Bpe13g01417 979 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 452 462 IPR000408 -
Bpe13g01417 979 Pfam FYVE zinc finger 636 702 IPR000306 GO:0046872
Bpe13g01417 979 CDD PH_PLC_plant-like 12 122 - -
Bpe13g01417 979 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 480 531 IPR000408 -
Bpe13g01417 979 Pfam Transcription factor BRX N-terminal domain 845 872 IPR027988 -
Bpe13g01417 979 MobiDBLite consensus disorder prediction 136 158 - -
Bpe13g01417 979 SUPERFAMILY FYVE/PHD zinc finger 636 710 IPR011011 -
Bpe13g01417 979 SMART fyve_4 635 703 IPR000306 GO:0046872
Bpe13g01417 979 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 650 708 IPR013083 -
Bpe13g01417 979 MobiDBLite consensus disorder prediction 890 921 - -
Bpe13g01417 979 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 761 973 - -
Bpe13g01417 979 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 761 973 - -
Bpe13g01417 979 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 640 702 IPR017455 -
Bpe13g01417 979 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 14 761 - -
Bpe13g01417 979 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 14 761 - -
Bpe13g01417 979 MobiDBLite consensus disorder prediction 136 167 - -
Bpe13g01417 979 Pfam Transcription factor regulating root and shoot growth via Pin3 920 973 IPR013591 -
Bpe13g01417 979 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 414 465 IPR000408 -
Bpe13g01417 979 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 245 306 IPR000408 -
Bpe13g01417 979 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 400 410 IPR000408 -
Bpe13g01417 979 Pfam Regulator of chromosome condensation (RCC1) repeat 414 462 IPR000408 -
Bpe13g01417 979 Pfam Regulator of chromosome condensation (RCC1) repeat 358 410 IPR000408 -
Bpe13g01417 979 Pfam Regulator of chromosome condensation (RCC1) repeat 307 355 IPR000408 -
Bpe13g01417 979 Pfam Regulator of chromosome condensation (RCC1) repeat 585 632 IPR000408 -
Bpe13g01417 979 Pfam Regulator of chromosome condensation (RCC1) repeat 531 580 IPR000408 -
Bpe13g01417 979 Pfam Regulator of chromosome condensation (RCC1) repeat 479 528 IPR000408 -
Bpe13g01417 979 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 584 635 IPR000408 -
Bpe13g01417 979 ProSiteProfiles BRX domain profile. 919 974 IPR013591 -
Bpe13g01417 979 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 570 580 IPR000408 -
Bpe13g01417 979 SUPERFAMILY PH domain-like 13 121 - -
Bpe13g01417 979 SUPERFAMILY RCC1/BLIP-II 244 637 IPR009091 -
Bpe13g01417 979 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 532 583 IPR000408 -
Bpe13g01417 979 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 359 413 IPR000408 -
Bpe13g01417 979 Gene3D - 13 127 IPR011993 -
Bpe13g01417 979 CDD FYVE_like_SF 646 698 - -
Bpe13g01417 979 Gene3D - 475 649 IPR009091 -
Bpe13g01417 979 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 307 358 IPR000408 -
Bpe13g01417 979 Gene3D - 369 474 IPR009091 -
Bpe13g01417 979 Gene3D - 172 368 IPR009091 -
Bpe13g01417 979 Coils Coil 801 870 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g01417 - - - csv:101222790 1401.34
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01346 Bpe-Chr2:17098921 Bpe13g01417 Bpe-Chr13:19418907 0 dispersed
Bpe06g00309 Bpe-Chr6:14421684 Bpe13g01417 Bpe-Chr13:19418907 4.57E-08 dispersed
Bpe10g00274 Bpe-Chr10:10092131 Bpe13g01417 Bpe-Chr13:19418907 1.31E-06 dispersed
Bpe11g00936 Bpe-Chr11:6922551 Bpe13g01417 Bpe-Chr13:19418907 0 dispersed
Bpe13g01417 Bpe-Chr13:19418907 Bpe14g00336 Bpe-Chr14:3247589 9.69E-14 dispersed
Bpe13g01417 Bpe-Chr13:19418907 Bpe02g01605 Bpe-Chr2:18929340 4.59E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g891 . . . Bda11g01223 Bpe13g01417 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01223 . . . . . . . . . . . . Cpe07g00205 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008880 1 4 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32